View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_51 (Length: 242)
Name: NF11729_high_51
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 50789955 - 50789726
Alignment:
| Q |
16 |
catatgctagctaactacgttaagatattgtcactctcatggagtacccttaaggtaacctctttt-----gtatgttatttcctttttaattttcagct |
110 |
Q |
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| T |
50789955 |
catatgctagctaactacgttaagatattgtcactctcatggagtacccttaaggtaacctcttttaatttgtatgttatttcctttttaattttcagct |
50789856 |
T |
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| Q |
111 |
taattagttcctctattataatttacgcacataattagtcccctaaaattcacatgcatttgacagtttgcctacctaagtctttggga--gaaatttgg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50789855 |
taattagttcctctattataatttacgcacataattagtcccctaaaattcacatgcatttgacagtttgcctacctaagtctttgggatctaaatttgg |
50789756 |
T |
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| Q |
209 |
caaatgttgtaagttatttggtcccaaatt |
238 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50789755 |
caaatgttgtaagttatttggtcccaaatt |
50789726 |
T |
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