View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_60 (Length: 225)
Name: NF11729_high_60
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_60 |
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| [»] scaffold0496 (1 HSPs) |
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| [»] scaffold1330 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 7457887 - 7458079
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7457887 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatgaaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
7457986 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7457987 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccaatgccaactggagtattggaggcaccaccatcttatg |
7458079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 7411808 - 7412000
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7411808 |
atgaataaagcaagaaaaatgtgttggggtgtatttatggatgaaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
7411907 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatcttatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7411908 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccaatgccaactggagtattggaggcaccaccatcttatg |
7412000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 44919976 - 44920056
Alignment:
| Q |
48 |
tttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtggtgaggaatttgat |
128 |
Q |
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|||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||| ||| || |||||||| || |||||| |
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| T |
44919976 |
tttatggatgaaaaattttatgtccttggcggagttggagttgacaaaacaacacaactaacttgtggtgaagagtttgat |
44920056 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 2736 - 2905
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || | |||||| |||| ||||| ||||||||||| |
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| T |
2736 |
atgaataaagcaagaaaaatgtgttcaagtgtatttatggatggaaaattttacgtccttggtgggatagcagctgacaaaaaaacacaacttacatgtg |
2835 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagt |
184 |
Q |
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||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
2836 |
gtgaggagtttgatataaagaataaaaaatggcgtgaaatacccaacatgctcccagtacgaactggagt |
2905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 1538 - 1727
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
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| T |
1538 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
1637 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatctt |
204 |
Q |
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| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| |
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| T |
1638 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttctt |
1727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 3840 - 3651
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
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| T |
3840 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
3741 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatctt |
204 |
Q |
| |
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| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| |
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| T |
3740 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttctt |
3651 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 3953 - 3764
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
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| T |
3953 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
3854 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatctt |
204 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| |
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| T |
3853 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttctt |
3764 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 10035 - 9846
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
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| T |
10035 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
9936 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatctt |
204 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| |
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| T |
9935 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttctt |
9846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 48739 - 48928
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
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|
| T |
48739 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgaaaaaaaaacacagcttacatgtg |
48838 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatctt |
204 |
Q |
| |
|
| ||||| |||||||| |||| |||| |||||||||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| |
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|
| T |
48839 |
gggaggagtttgatatgaagacaaaaaaatggcgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttctt |
48928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 35139 - 35328
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgtccttggtggaattggagctgataaaacaacaccacttacatgtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || | |||||| |||| ||||| |||||||||| |
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|
| T |
35139 |
atgaataaagcaagaaaaatgtgttcaagtgtattcatggatggaaaattttatgtccttggtgggatagcagctgacaaaaaaacacagcttacatgtg |
35238 |
T |
|
| Q |
115 |
gtgaggaatttgatataaagagaaaagaatggcgtgaaatacccaacatgttcccagtgccaactggagtattggaggcaccaccatctt |
204 |
Q |
| |
|
| ||||| |||||||| |||| |||| ||||| |||||||||| ||||||||||| || | ||||||||| || ||| ||||||| |||| |
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|
| T |
35239 |
gggaggagtttgatatgaagacaaaaaaatggtgtgaaatacctaacatgttccccgtacgaactggagtgtttgagacaccaccttctt |
35328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 17356620 - 17356675
Alignment:
| Q |
15 |
atgaataaagcaagaaaaatgtgttcgggtgtatttatggatggaaaattttatgt |
70 |
Q |
| |
|
||||||||| | || || |||||||| |||||||| |||||||||||||||||||| |
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|
| T |
17356620 |
atgaataaaccgaggaagatgtgttctggtgtattcatggatggaaaattttatgt |
17356675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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