View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_high_61 (Length: 223)

Name: NF11729_high_61
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_high_61
NF11729_high_61
[»] chr2 (4 HSPs)
chr2 (1-64)||(38252760-38252823)
chr2 (1-64)||(43156719-43156782)
chr2 (64-102)||(38252430-38252468)
chr2 (64-102)||(43157074-43157112)
[»] chr1 (6 HSPs)
chr1 (1-64)||(11474043-11474106)
chr1 (64-102)||(11474398-11474436)
chr1 (65-102)||(28245615-28245652)
chr1 (1-64)||(50019513-50019576)
chr1 (1-32)||(28245962-28245993)
chr1 (67-102)||(50019104-50019139)
[»] chr6 (3 HSPs)
chr6 (1-64)||(19307622-19307685)
chr6 (64-102)||(10123842-10123880)
chr6 (65-102)||(19307292-19307329)
[»] chr5 (2 HSPs)
chr5 (1-64)||(25382156-25382219)
chr5 (64-107)||(25382512-25382555)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38252823 - 38252760
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38252823 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 38252760  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43156719 - 43156782
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43156719 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 43156782  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 38252468 - 38252430
Alignment:
Q  64 gggggccaacctatttgaatggaatgaatgcataggggg 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38252468 gggggccaacctatttgaatggaatgaatgcataggggg 38252430  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 43157074 - 43157112
Alignment:
Q  64 gggggccaacctatttgaatggaatgaatgcataggggg 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43157074 gggggccaacctatttgaatggaatgaatgcataggggg 43157112  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11474043 - 11474106
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11474043 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 11474106  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 11474398 - 11474436
Alignment:
Q  64 gggggccaacctatttgaatggaatgaatgcataggggg 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11474398 gggggccaacctatttgaatggaatgaatgcataggggg 11474436  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 28245652 - 28245615
Alignment:
Q  65 ggggccaacctatttgaatggaatgaatgcataggggg 102  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28245652 ggggccaacctatttgaatggaatgaatgcataggggg 28245615  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50019576 - 50019513
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 64  Q
    |||||| ||||||||| ||||| |||||||||||||||||  || |||||| ||||||||||||    
T  50019576 aaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctccacgtaaagaaaaaag 50019513  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28245993 - 28245962
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgct 32  Q
    ||||||||||||||||||||||||||||||||    
T  28245993 aaagttgtctggaaaaacagcatagtcgcgct 28245962  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 50019139 - 50019104
Alignment:
Q  67 ggccaacctatttgaatggaatgaatgcataggggg 102  Q
    ||||| ||||||||||||||||||||||||||||||    
T  50019139 ggccagcctatttgaatggaatgaatgcataggggg 50019104  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19307685 - 19307622
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 64  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19307685 aaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaag 19307622  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 10123880 - 10123842
Alignment:
Q  64 gggggccaacctatttgaatggaatgaatgcataggggg 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10123880 gggggccaacctatttgaatggaatgaatgcataggggg 10123842  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 19307329 - 19307292
Alignment:
Q  65 ggggccaacctatttgaatggaatgaatgcataggggg 102  Q
    |||||||||||||||||||||||||||| |||||||||    
T  19307329 ggggccaacctatttgaatggaatgaattcataggggg 19307292  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 25382156 - 25382219
Alignment:
Q  1 aaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcactccacctaaagaaaaaag 64  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  25382156 aaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctccacctaaagaaaaaag 25382219  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 25382512 - 25382555
Alignment:
Q  64 gggggccaacctatttgaatggaatgaatgcataggggggcact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25382512 gggggccaacctatttgaatggaatgaatgcataggggggcact 25382555  T

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