View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_10 (Length: 546)
Name: NF11729_low_10
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 190 - 536
Target Start/End: Complemental strand, 35744757 - 35744411
Alignment:
| Q |
190 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
289 |
Q |
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| T |
35744757 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
35744658 |
T |
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| Q |
290 |
tgcgttgcatgggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
389 |
Q |
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| T |
35744657 |
tgcgttgcattggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
35744558 |
T |
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| Q |
390 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
489 |
Q |
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| T |
35744557 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
35744458 |
T |
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| Q |
490 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
536 |
Q |
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| T |
35744457 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
35744411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 35744937 - 35744796
Alignment:
| Q |
1 |
tctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744937 |
tctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttccaacatgcaaggatgacaacaacatgcgtcaattgggta |
35744838 |
T |
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| Q |
101 |
tgttactaatgatcttagatatgcatcaacaatgtaaaaacttctt |
146 |
Q |
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| T |
35744837 |
tgttattaatgatct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
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