View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11729_low_11 (Length: 544)
Name: NF11729_low_11
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 35745420 - 35744914
Alignment:
| Q |
18 |
aatggagttatcattcgtaggagcagaccaattgattttaatggtagagattcatacgaagatcatggcattcagagatatcatggacttagctccatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745420 |
aatggagttatcattcgtaggagcagaccaattgattttaatggtagagattcatatgaagatcatggcattcagagatatcatggacttagctccatgt |
35745321 |
T |
|
| Q |
118 |
aacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcctgatctgttgtaaaatgac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35745320 |
aacagttctgcttccttgcgcgaggtatgtgacataataagagtttaacttcgtaacattaagtgacagatttcagtttcct---ctgttgtaaaatgac |
35745224 |
T |
|
| Q |
218 |
aatcattattcttggnnnnnnnnnnnnnnnatatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatccagagatcataaca |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745223 |
aatcattattcttggtttttttttttt---atatgtcacattgcagatagttatgagaacactgaatgatctacaaaggctatatccagagatcataaca |
35745127 |
T |
|
| Q |
318 |
aaaactcaactgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaattattctaattatg |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745126 |
aaaactcaagtgtcaaagattgaggacaagtctattgatcaggtaattatagtttcaacattaaataagctgcacctgaaatgaaattattctaattatg |
35745027 |
T |
|
| Q |
418 |
ataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttgaagtctcttggaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35745026 |
ataattactgaaatcttagcatcctgaaaatctaaatgtggacatttattttatactaggctgtggcctacttctgtgaggctttgaagtctcttggaga |
35744927 |
T |
|
| Q |
518 |
gtcatggatgatg |
530 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35744926 |
gtcatggatgatg |
35744914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University