View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_12 (Length: 540)
Name: NF11729_low_12
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 56 - 524
Target Start/End: Complemental strand, 48069226 - 48068760
Alignment:
| Q |
56 |
tataaaagaggtctcaataacgattggaaatataaaaggatgatatgaagatgaaaacccaacgtagaaatcgagagaaacccttgtatatggaggttgt |
155 |
Q |
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| T |
48069226 |
tataaaagaggtctcaataacgattgaaaatataaaaggatgatatgaagatgaaaacccaatatagaaatagagagaaacccttgtatatggaggttgt |
48069127 |
T |
|
| Q |
156 |
taccacattcgtgtgtgtagcacgaaaatatttgtcgtgtcttttatcatttttctattctttttagtcctttcatttactaaaagtgtctcgtcnnnnn |
255 |
Q |
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| T |
48069126 |
taccacattcgtgtgtgtagcacgaaaatatttatcgtgtcttttagcatttttctattctttttagtcattttatttactaaaagtgtctcgtcaaaaa |
48069027 |
T |
|
| Q |
256 |
nnttacgatgagactcaattgtagttttggtctcatatttttactcactcacaattttttccttcataaaatccatttttgtcccgcactcctagttttg |
355 |
Q |
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| T |
48069026 |
aattacgatgagactcaattgtagttttgg--tcatatttttactcactcacaattttctccttcataaaatccatttttgtcccgcactcatagttttg |
48068929 |
T |
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| Q |
356 |
aatcaaaaattgcgaagtagcaagnnnnnnnattgacgtgacataaaactagtatattattaatccaattggatgatttcacatcaacgtgttttaagtc |
455 |
Q |
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| T |
48068928 |
aatcaaaaattgcgaattagcaactttttttattgacgtgacataaaactagtatattattaatccaattggatgatttcacatcaatgtgttttaagtc |
48068829 |
T |
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| Q |
456 |
acaaacttgtcttgaaataaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattat |
524 |
Q |
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| T |
48068828 |
acaaacttgtcttgaaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattat |
48068760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 48064162 - 48064104
Alignment:
| Q |
466 |
cttgaaataaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattat |
524 |
Q |
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| T |
48064162 |
cttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattat |
48064104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 10396602 - 10396466
Alignment:
| Q |
1 |
gtggaattaccattgcaggaagtgcatggctagctaagttaattacgtgaacagttataaaa-gaggtctcaataacgattggaaatataaaaggatgat |
99 |
Q |
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| T |
10396602 |
gtggaagtaccatcgcaggaagtgcatggttagctaagttaattacttgaacagttataaaaagaggtctcaatatcgattgaaaatataaaaggaggat |
10396503 |
T |
|
| Q |
100 |
atgaagatgaaaacccaacgtagaaatcgagagaaac |
136 |
Q |
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| T |
10396502 |
atgaagatgaaaatacaacgtagaaataaagagaaac |
10396466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 10396438 - 10396383
Alignment:
| Q |
156 |
taccacattcgtgtgtgtagcacgaaaatatttgtcgtgtcttttatcatttttct |
211 |
Q |
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| T |
10396438 |
taccacattcgtgtctttagcacgaaaatatttgttgtgtcatttaccatttttct |
10396383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 8913512 - 8913440
Alignment:
| Q |
64 |
aggtctcaataacgattggaaatataaaaggatgatatgaagatgaaaacccaacgtagaaatcgagagaaac |
136 |
Q |
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| T |
8913512 |
aggtctcaatatcgactgaaaatataaaaggaggatatgaagataaaaacacaacattgaaatagagagaaac |
8913440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 8913710 - 8913661
Alignment:
| Q |
8 |
taccattgcaggaagtgcatggctagctaagttaattacgtgaacagtta |
57 |
Q |
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| T |
8913710 |
taccattgcaggaagtgcatggctagctaacttatttacttgaactgtta |
8913661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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