View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_low_13 (Length: 514)

Name: NF11729_low_13
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_low_13
NF11729_low_13
[»] chr7 (1 HSPs)
chr7 (18-504)||(36806018-36806502)
[»] chr1 (3 HSPs)
chr1 (184-258)||(2092780-2092851)
chr1 (184-259)||(43205647-43205719)
chr1 (18-54)||(5844976-5845012)
[»] scaffold0025 (1 HSPs)
scaffold0025 (134-206)||(49668-49741)
[»] chr4 (1 HSPs)
chr4 (70-124)||(35075898-35075954)
[»] chr3 (2 HSPs)
chr3 (70-123)||(2831073-2831128)
chr3 (18-54)||(51326465-51326501)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 36806018 - 36806502
Alignment:
Q  18 aataattccgttaaagttcttcatgaaaaacaaaattctatgtatacagtaatttcgtcttttacatatttttcagttaaacaacatgtgtatacagcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  36806018 aataattccgttaaagttcttcatgaaaaacaaaattctatgtatacaacaatttcgtcttttacatatttctcaatcaaacaacatgtgtatacagcaa 36806117  T
Q  118 ttttcattagggagggacattttaccccacactccaacaattatacttccaccctacaaataatttaaaaataccaattttaacattttcagattcacac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||    
T  36806118 ttttcattagggagggacattttaccccacactccaacaattatccttccacactacaaataa-ttaaaaataccaattttaaccttttcaaattcacac 36806216  T
Q  218 ccttccaccccatcgtgttgtgtttctagaattgaaaatggtcaagttttcagaatttataactacatcggtatttattcttgaatnnnnnnntcatacc 317  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  36806217 ccttccaccccatcttgttgtgtttctagaattgaaaatggtccagttttcagaatttataactacatcggtatttattcttgaataaaaaaaccatacc 36806316  T
Q  318 cgaatgttaatttataatctcgatgtcggctccgatggttccttcctttgttcctgtccagaaaactagttattttaggttatgacgatgataatgattt 417  Q
     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  36806317 tgaatgttaatctataatctcgatgtcggctccgatggttccttcctttgttcctgtctagaaaactagtta-tttaggttatgacgatgataatgattt 36806415  T
Q  418 gttatagtccgtagtaattagtcaaaaatcaaattgaatcggctatgttatgattaatttatagcttctcacgattttccccctttg 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36806416 gttatagtccgtagtaattagtcaaaaatcaaattgaatcggctatgttatgattaatttatagcttctcacgattttccccctttg 36806502  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 2092851 - 2092780
Alignment:
Q  184 aaaaataccaattttaacattttcagattcacacccttccaccccatcgtgttgtgtttctagaattgaaaatgg 258  Q
    ||||||||| |||||||| |||||| | ||||||||||||||||||||    |||||||| ||| ||||||||||    
T  2092851 aaaaatacctattttaaccttttcaaaatcacacccttccaccccatc---atgtgtttccagacttgaaaatgg 2092780  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 43205719 - 43205647
Alignment:
Q  184 aaaaataccaattttaacattttcagattcacacccttccaccccatcgtgttgtgtttctagaattgaaaatggt 259  Q
    |||||||| ||||||||| |||| | | ||||||||||||||||||||    |||||||| ||| |||||||||||    
T  43205719 aaaaatactaattttaacctttttaaaatcacacccttccaccccatc---atgtgtttccagacttgaaaatggt 43205647  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 5845012 - 5844976
Alignment:
Q  18 aataattccgttaaagttcttcatgaaaaacaaaatt 54  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  5845012 aataattctgttaaagttcttcatgaaaaataaaatt 5844976  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 49668 - 49741
Alignment:
Q  134 acattttaccccacactccaacaattatacttccaccc-tacaaataatttaaaaataccaattttaacatttt 206  Q
    ||||| ||||||| || |||||||||||||  | |||| ||||||||||| ||||||||||| |||||| ||||    
T  49668 acattataccccataccccaacaattatacccctacccctacaaataattaaaaaataccaagtttaacctttt 49741  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 35075954 - 35075898
Alignment:
Q  70 tttcgtcttttacatatttttc--agttaaacaacatgtgtatacagcaattttcat 124  Q
    ||||||||||||||| | ||||  ||  |||||||||||||||||||||||||||||    
T  35075954 tttcgtcttttacatgtgtttctcagccaaacaacatgtgtatacagcaattttcat 35075898  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 2831073 - 2831128
Alignment:
Q  70 tttcgtcttttacatatttttc--agttaaacaacatgtgtatacagcaattttca 123  Q
    ||||||||||||||||| ||||  ||  |||||||||||||||||| |||||||||    
T  2831073 tttcgtcttttacatatgtttctcagccaaacaacatgtgtatacaacaattttca 2831128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 51326465 - 51326501
Alignment:
Q  18 aataattccgttaaagttcttcatgaaaaacaaaatt 54  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  51326465 aataattacgttaaagttcttcatcaaaaacaaaatt 51326501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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