View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_14 (Length: 514)
Name: NF11729_low_14
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 21 - 508
Target Start/End: Original strand, 22039305 - 22039805
Alignment:
| Q |
21 |
gacatgccacgattaattaacaaatgaaggtgaggaactgaaggaagcttcttcgatattaactttac--------------taattctttataagcatt |
106 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22039305 |
gacatgccacgattaattaaaaaatgaaggtgaggaactgaaggaagcttcttcgatattaactttaccaacaagttattactaattctttataagcatt |
22039404 |
T |
|
| Q |
107 |
gaatattttattttcgaaattttgagcttgttgaacaaggcagttgacccattcattaaattattatttatggatgaaatccatgaattaactatcacta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039405 |
gaatattttattttcgaaattttgagcttgttgaacaaggcaattgacccattcattaaattattatttatggatgaaatccatgaattaactatcacta |
22039504 |
T |
|
| Q |
207 |
tataaaggcaagagcaatgctagcttagcataagacaaattaaattaagatggcagatcaagtgaagctacatggattttggtacagtccttttactttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22039505 |
tataaaggcaagagcaatgctagcttagcataagacaaattaa-ttaagatggcagatcaagtgaagatacatggattttggtacagtccttttacttta |
22039603 |
T |
|
| Q |
307 |
agggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039604 |
agggtagtattgacccttaagctaaaaggtataccatatgagaacatagaggaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgc |
22039703 |
T |
|
| Q |
407 |
acaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgct |
506 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039704 |
acaagaaaactccagtgttggttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgct |
22039803 |
T |
|
| Q |
507 |
tc |
508 |
Q |
| |
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|| |
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|
| T |
22039804 |
tc |
22039805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 268 - 508
Target Start/End: Complemental strand, 40326177 - 40325937
Alignment:
| Q |
268 |
gtgaagctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtt |
367 |
Q |
| |
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||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
40326177 |
gtgaaactacacggattttggtatagtccttatactttgagggtagtatggaccttgaatctaaagggtataccatatgagaacatagaggaagatcgtt |
40326078 |
T |
|
| Q |
368 |
tcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgt |
467 |
Q |
| |
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|||| || ||||||| ||||||||||| || ||| | |||||||| ||||||||||| ||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
40326077 |
tcaataaaagtcctctgcttcttcaatataacccaatacacaagaagactccagtgttggttcatgatggaaaacccatatgcgagtcaatgatcattgt |
40325978 |
T |
|
| Q |
468 |
tgaatacattgatgagatatggccacaataccctttgcttc |
508 |
Q |
| |
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|||||||||||||||||||||||||||| || | ||||||| |
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| T |
40325977 |
tgaatacattgatgagatatggccacaaaacacattgcttc |
40325937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 268 - 494
Target Start/End: Complemental strand, 40338523 - 40338297
Alignment:
| Q |
268 |
gtgaagctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtt |
367 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||| ||||| |||| |||||| || | |||||||||||||||||||||||||| |||||||||| |
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| T |
40338523 |
gtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccctaaatttgaaaggtataccatatgagaacatagaggaagatcgtt |
40338424 |
T |
|
| Q |
368 |
tcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgt |
467 |
Q |
| |
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|||| ||||| ||||||||||||| || || || || | |||||| ||||||||| | |||| |||| |||||| |||||||||||||||||||||| |
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| T |
40338423 |
tcaataagagctctcaacttcttcactataaccccgtacgcaagaatactccagtgctgattcacgatgaaaaaccaatatgtgagtctatgatcattgt |
40338324 |
T |
|
| Q |
468 |
tgaatacattgatgagatatggccaca |
494 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
40338323 |
tgaatacattgatgagatatggccaca |
40338297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 268 - 494
Target Start/End: Complemental strand, 40343707 - 40343481
Alignment:
| Q |
268 |
gtgaagctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtt |
367 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||| |||| |||| | || | || ||||||||||||||||||||||| ||| |||| | |
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| T |
40343707 |
gtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaatatcgct |
40343608 |
T |
|
| Q |
368 |
tcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgt |
467 |
Q |
| |
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|||| || ||||||| ||||||||||| || ||| | ||||||| ||||||||| || |||||||||||||||| |||||||||| ||||||||||| |
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| T |
40343607 |
tcaataaaagtcctctgcttcttcaatataacccaatatacaagaagactccagtgctaattcatgatggaaaaccaatatgtgagtccatgatcattgt |
40343508 |
T |
|
| Q |
468 |
tgaatacattgatgagatatggccaca |
494 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
40343507 |
tgaatacattgatgagatatggccaca |
40343481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 274 - 495
Target Start/End: Complemental strand, 40331388 - 40331167
Alignment:
| Q |
274 |
ctacatggattttggtacagtccttttactttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaaca |
373 |
Q |
| |
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|||||||||| |||||| |||||||| ||||| ||||| |||| |||||| || || || |||||||| ||||| | ||||||||||||| ||||| | |
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| T |
40331388 |
ctacatggatcttggtatagtcctttcactttaagggtggtatggaccctaaatctgaagggtataccgtatgatagtatagaagaagatcacttcaata |
40331289 |
T |
|
| Q |
374 |
agagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaata |
473 |
Q |
| |
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|| |||||||||||||||||| || ||| | ||||| |||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
40331288 |
ggactcctcaacttcttcaatataacccaatacacaaaaaaactccagtgctggttcatgatggaaaacccatatgtgagtccatgattattgttgaata |
40331189 |
T |
|
| Q |
474 |
cattgatgagatatggccacaa |
495 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
40331188 |
cattgatgagatatggccacaa |
40331167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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