View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_16 (Length: 499)
Name: NF11729_low_16
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 23585981 - 23586458
Alignment:
| Q |
1 |
aaattttctatcaaaaagataaatataaaattaatcctattggtgcgttatataaagcgcacggttga----caatggcgcgggaaagccaatcaaagnn |
96 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23585981 |
aaattttctatcaaaaa-ataa-tataaaattaatcctattggagcgttatataaagcgcacggttgatagccaatggcgcgggaaagccaatcaaagaa |
23586078 |
T |
|
| Q |
97 |
nnnnnnnnnnnnnnggcggtacgaaaactcaaaccaactacaacgcgtgtcctttcagaattttctcgaacgtgctagacaatgctagagaaatcccaca |
196 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23586079 |
aaataaaatataaaggcggtacgaaaactcaaaccaactacaacgcgtgtcctttcagaattttctcgaacgtgctagacaatgctagagaaatcccaca |
23586178 |
T |
|
| Q |
197 |
ccctcaattcaaatttagatcaaatcgtcaccgtccaaattactcatccaacggctaaaaacactataccgaacattccagacatcaatcctgttctata |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23586179 |
ccctcaattcaaatttagatcaaatcgtcaccgtccaaattactcatccaacggctaaaaacactataccgaacattccagacatcaatcctgttctata |
23586278 |
T |
|
| Q |
297 |
ttaacacaaagcttctctcctcaactcattcaattcagtttcaaagnnnnnnnnnnnnnnnnnnnnnncttcaattcattctctagtactcaaaacccta |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23586279 |
ttaacacaaagcttctctcctcaactcattcaattcagtttcaaag------aaaacaaaaaacaaaacttcaattcattctctagtactcaaaacccta |
23586372 |
T |
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| Q |
397 |
gttttttctctattctcaactctacaaaaaccctagttttcattcagaaggaaannnnnnngagagattatggctggaaaaggtgaagg |
485 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
23586373 |
gttttt--tctattctcaactctacaaaaaccctagttttcattcagaaggaaa-tttcttgagagattatggctggaaaaggcgaagg |
23586458 |
T |
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