View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_19 (Length: 444)
Name: NF11729_low_19
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 29525823 - 29525413
Alignment:
| Q |
17 |
gaatcagataagattaacagcaagaaatggtaagagtattgattgagggattcatactgattcttaaaggagaatcaatgatggtgctctagatgtgtaa |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525823 |
gaatcagataagattaaccgcaagaaatggtaagagtattgattgagggattcatagtgattcttaaaggagaatcaatgatggtgctctagatgtgtaa |
29525724 |
T |
|
| Q |
117 |
aagctcaattatatatctcagggatgtgggaaaacaattatctgaactttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttata |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29525723 |
aaactcaattatatatctcagggatgtgggaaaacaattatctgaattttgttaacaatctctggtcttatctcttccctctgtttaaatgttccttata |
29525624 |
T |
|
| Q |
217 |
attcttattctgtaggaatttatagttttcttgtttactgttactgtttataattctttatttccgccaaaaatgtcttttagaactcagaattcgtcat |
316 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29525623 |
attcttgttctgtaggaatttatagttttcttg-ttactgttactgtttataattctttatttctgccaaaaatgtcttttagaactcagaattcgtcat |
29525525 |
T |
|
| Q |
317 |
cagacacattgtatttcttgcacattctatacggtttctgattttatattaattcatttgttcctcggaatccgaacacattgaaattgttattttatac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| ||||| |
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| T |
29525524 |
cagacacattgtatttcttgcacattctatacggtttctgattttatattaattcattttttcctcgtaatccgaacaaattgaaattgttattctatac |
29525425 |
T |
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| Q |
417 |
ggtgttgggtgt |
428 |
Q |
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|||||||||||| |
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| T |
29525424 |
ggtgttgggtgt |
29525413 |
T |
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