View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_low_2 (Length: 651)

Name: NF11729_low_2
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_low_2
NF11729_low_2
[»] chr7 (8 HSPs)
chr7 (1-638)||(21181910-21182547)
chr7 (360-504)||(21204806-21204950)
chr7 (384-515)||(21852345-21852476)
chr7 (384-638)||(21204674-21204926)
chr7 (359-493)||(21209070-21209204)
chr7 (589-638)||(21208971-21209020)
chr7 (577-638)||(21852224-21852285)
chr7 (130-159)||(32122296-32122325)
[»] chr1 (1 HSPs)
chr1 (131-187)||(26631688-26631746)
[»] chr3 (1 HSPs)
chr3 (140-200)||(30790779-30790836)
[»] chr8 (1 HSPs)
chr8 (135-172)||(42205349-42205386)
[»] chr6 (1 HSPs)
chr6 (140-188)||(20809087-20809135)
[»] chr4 (3 HSPs)
chr4 (131-188)||(33844164-33844221)
chr4 (140-180)||(14123716-14123756)
chr4 (140-188)||(43072214-43072262)
[»] chr5 (2 HSPs)
chr5 (135-183)||(4445362-4445410)
chr5 (148-200)||(32056166-32056218)
[»] chr2 (1 HSPs)
chr2 (136-200)||(36394574-36394641)


Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Complemental strand, 21182547 - 21181910
Alignment:
Q  1 aattggtgtccaatctagtgaatgtccacttgttgagtgcgtgttttagtatttgcttttgtgataaagtggaatactgtattagaaaaatgaattttga 100  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182547 aattggtgtctaatctagtgaatgtccacttgttgagtgcctgttttagtatttgcttttgtgataaagtggaatactgtattagaaaaatgaattttga 21182448  T
Q  101 tataaaacttggatgtcgaatacagcatgctttgatttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182447 tataaaacttggatgtcgaatacagcatgctttgatttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaaca 21182348  T
Q  201 cgtacagtttcacacacggtgtttgcacgttgatgttcaaataacacaactattatattataagtagttacgtttaaggcttcatattttcaattttagg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21182347 cgtacagtttcacacacggtgtttgcacgttgatgttcaaataacacaactattatattatgagtagttacgtttaaggcttcatattttcaattttagg 21182248  T
Q  301 aattatttgcttcattcttttaataattggggattattcctagaatatatatttatctgcacttgataccttttttagagcagttatacaatggccctgg 400  Q
    |||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182247 aattatttgcttcattcttttaataattggggattatttcaataagatatatttatctgcacttgataccttttttagagcagttatacaatggccctgg 21182148  T
Q  401 aagtccattgattgtgtaggcttcagaaacatttggtcctcccccagtttgcagggcttgtgctatgatggcctcagtatctgcattgaaccattctcct 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21182147 aagtccattgattgtgtaggcttcagaaacatttggtcctcccccagtttgcagggcttgtgctatgatggcctcagtatctgcattgaaccattctcct 21182048  T
Q  501 aaaaccaaaattaaagagtataattagcttatgtaaatataaaaataggtagacttaggttcatcnnnnnnnnaacttcattaccaaatatcataggaac 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  21182047 aaaaccaaaattaaagagtataattagcttatgtaaatataaaaataggtagacttaggttcatcttttttgtaacttcattaccaaatatcataggaac 21181948  T
Q  601 ttccttgtggggttttgcaaaaggatatggaacatttt 638  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21181947 ttccttgtggggttttgcaaaaggatatggaacatttt 21181910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 360 - 504
Target Start/End: Complemental strand, 21204950 - 21204806
Alignment:
Q  360 cacttgataccttttttagagcagttatacaatggccctggaagtccattgattgtgtaggcttcagaaacatttggtcctcccccagtttgcagggctt 459  Q
    ||||||||||| ||   ||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||||| || ||||    
T  21204950 cacttgataccattagcagaacaattatacaatggccctggaagtccattaattgtgtatgcatcagagacatttggtcctccaccagtttggagagctt 21204851  T
Q  460 gtgctatgatggcctcagtatctgcattgaaccattctcctaaaa 504  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||    
T  21204850 gtgctatgattgcctcaggatctgcattgaaccattcacctaaaa 21204806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 384 - 515
Target Start/End: Complemental strand, 21852476 - 21852345
Alignment:
Q  384 ttatacaatggccctggaagtccattgattgtgtaggcttcagaaacatttggtcctcccccagtttgcagggcttgtgctatgatggcctcagtatctg 483  Q
    ||||||||||| |||||||||||||||||||| || || ||||| |||||||||||||| |||||||| || |||||||| ||||| ||||||| |||||    
T  21852476 ttatacaatggtcctggaagtccattgattgtatatgcatcagagacatttggtcctccaccagtttgtagagcttgtgcaatgattgcctcaggatctg 21852377  T
Q  484 cattgaaccattctcctaaaaccaaaattaaa 515  Q
     |||||||||||| ||||||||||||||||||    
T  21852376 tattgaaccattcacctaaaaccaaaattaaa 21852345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 384 - 638
Target Start/End: Complemental strand, 21204926 - 21204674
Alignment:
Q  384 ttatacaatggccctggaagtccattgattgtgtaggcttcagaaacatttggtcctcccccagtttgcagggcttgtgctatgatggcctcagtatctg 483  Q
    |||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||||| || |||||||||||||| ||||||| |||||    
T  21204926 ttatacaatggccctggaagtccattaattgtgtatgcatcagagacatttggtcctccaccagtttggagagcttgtgctatgattgcctcaggatctg 21204827  T
Q  484 cattgaaccattctcctaaaaccaaaattaaagagtataattagcttatgtaaatataaaaataggtagacttaggtt--catcnnnnnnnnaacttcat 581  Q
    ||||||||||||| ||||||| |||  ||| |   | ||||||||||||| ||||   || ||||||||  | |||||  ||||        |  || ||    
T  21204826 cattgaaccattcacctaaaagcaattttatat--tttaattagcttatgaaaatt--aagataggtagtttaaggttatcatccctttaatagttttat 21204731  T
Q  582 taccaaatatcataggaacttccttgtggggttttgcaaaaggatatggaacatttt 638  Q
    |||||||||  ||| ||||||||||||||||||| |||||||||||| || ||||||    
T  21204730 taccaaataagataagaacttccttgtggggtttagcaaaaggatattgatcatttt 21204674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 359 - 493
Target Start/End: Complemental strand, 21209204 - 21209070
Alignment:
Q  359 gcacttgataccttttttagagcagttatacaatggccctggaagtccattgattgtgtaggcttcagaaacatttggtcctcccccagtttgcagggct 458  Q
    |||||||| ||||||   ||| || |||||||||| ||||||||||| ||| |||||||| || ||||| |||||||||||||| |||||||| ||||||    
T  21209204 gcacttgaaacctttagcagaacaattatacaatgtccctggaagtcaattaattgtgtatgcatcagagacatttggtcctccaccagtttggagggct 21209105  T
Q  459 tgtgctatgatggcctcagtatctgcattgaacca 493  Q
    ||||| ||||| ||||||| |||||||||||||||    
T  21209104 tgtgcaatgattgcctcaggatctgcattgaacca 21209070  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 589 - 638
Target Start/End: Complemental strand, 21209020 - 21208971
Alignment:
Q  589 tatcataggaacttccttgtggggttttgcaaaaggatatggaacatttt 638  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21209020 tatcatgggaacttccttgtggggttttgcaaaaggatatggaacatttt 21208971  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 577 - 638
Target Start/End: Complemental strand, 21852285 - 21852224
Alignment:
Q  577 ttcattaccaaatatcataggaacttccttgtggggttttgcaaaaggatatggaacatttt 638  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||| ||| |||||||||    
T  21852285 ttcattaccaaatatgattggaacttccttgtgaggttttgcaaaagggtattgaacatttt 21852224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 32122325 - 32122296
Alignment:
Q  130 ctttgatttttgtgtattttttaaatgtgt 159  Q
    ||||||||||||||||||||||||||||||    
T  32122325 ctttgatttttgtgtattttttaaatgtgt 32122296  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 26631746 - 26631688
Alignment:
Q  131 tttgattttt--gtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagag 187  Q
    ||||||||||  |||||||||| |||||||| |||||||||||| ||||||||||||||    
T  26631746 tttgatttttacgtgtatttttaaaatgtgtgtaagttgtagaatataaaaagtaagag 26631688  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 30790779 - 30790836
Alignment:
Q  140 tgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaaca 200  Q
    |||||||||||||||||||| |||||||||||| ||||||   |||| |||||||||||||    
T  30790779 tgtgtattttttaaatgtgtgtaagttgtagaagataaaa---aagaaatagagataaaca 30790836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 42205349 - 42205386
Alignment:
Q  135 atttttgtgtattttttaaatgtgtttaagttgtagaa 172  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42205349 atttttgtgtattttttaaatgtgtgtaagttgtagaa 42205386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 20809087 - 20809135
Alignment:
Q  140 tgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagaga 188  Q
    |||||||||||||||||||| || |||||| || |||||||||||||||    
T  20809087 tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagaga 20809135  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 33844221 - 33844164
Alignment:
Q  131 tttgatttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagaga 188  Q
    |||| ||||||||||||||| |||||  |||||||||||| | ||||| |||||||||    
T  33844221 tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagaga 33844164  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 14123756 - 14123716
Alignment:
Q  140 tgtgtattttttaaatgtgtttaagttgtagaaaataaaaa 180  Q
    ||||||||||| |||||||| |||||||||||| |||||||    
T  14123756 tgtgtatttttaaaatgtgtataagttgtagaagataaaaa 14123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 43072262 - 43072214
Alignment:
Q  140 tgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagaga 188  Q
    ||||||||||| |||||||| |||| ||||||| ||||||||| |||||    
T  43072262 tgtgtatttttgaaatgtgtgtaagctgtagaagataaaaagttagaga 43072214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 4445362 - 4445410
Alignment:
Q  135 atttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagta 183  Q
    |||| ||||||||||| |||||| | |||||||||||| ||||||||||    
T  4445362 atttctgtgtatttttgaaatgtttgtaagttgtagaatataaaaagta 4445410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 32056218 - 32056166
Alignment:
Q  148 ttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaaca 200  Q
    ||||| ||| || |||||||||||| ||||||||||  |||||||||||||||    
T  32056218 ttttacatgagtgtaagttgtagaagataaaaagtagaagatagagataaaca 32056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 36394641 - 36394574
Alignment:
Q  136 tttttgtgtattttttaaa-tgtgtttaagttgtagaaaataaaaagtaa--gagatagagataaaca 200  Q
    ||||||| ||||||||||| ||||| | ||| |||||| |||||||||||  ||||||||||||||||    
T  36394641 tttttgtctattttttaaaatgtgtgtgagtggtagaagataaaaagtaagagagatagagataaaca 36394574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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