View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_20 (Length: 434)
Name: NF11729_low_20
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 33497182 - 33497601
Alignment:
| Q |
1 |
acacaaaaccattgaaccagaatgaaggaatcaatgaagcagaagctcccgtgagcaagaagagaaattggggtggggttgtaattagaagtgagaataa |
100 |
Q |
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| T |
33497182 |
acacaaaaccattgaaccagaatgaaggaatcaatgaagcagaagctcccgtgagcaagaagagaaattggggtggggttgtaattagaagtgagaataa |
33497281 |
T |
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| Q |
101 |
tattacaactggtgaagaaaaagataaaaagtatcgtgattttgatcatgaaatgcacattttgactgaaagagaaaggagaaagaaaatgaggaacatg |
200 |
Q |
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| T |
33497282 |
tattacaactggtgaagaaaaagataaaaagtatcgtgattttgatcatgaaatgcacattttgactgaaagagaaaggagaaagaaaatgaggaacatg |
33497381 |
T |
|
| Q |
201 |
ttcgatagccttcatgccttgcttcctgaacttccttctaaggtaaattcattttcatcttcaatcagttcatagataatacttgcatgatcataataat |
300 |
Q |
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| T |
33497382 |
ttcgatagccttcatgccttgcttcctgaacttccttctaaggtaaattcattttcatcttcaatcagttcatagataatacttgcatgatcataataat |
33497481 |
T |
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| Q |
301 |
tttaatcgtttgaaaatcaagtatttcctttttccccttgaagtttatctaaatcatatatgtcatgtttcttattttttctatatcttttccgatttgg |
400 |
Q |
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| T |
33497482 |
tttaatcgtttgaaaatcaagtatttcctttttccccttgaagtttatctaaatcatatatgtcatgtttcttattttttctatatcttttccgatttgg |
33497581 |
T |
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| Q |
401 |
cacatcaaaaatgtatttag |
420 |
Q |
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| T |
33497582 |
cacatcaaaaatgtatttag |
33497601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 33484667 - 33484955
Alignment:
| Q |
1 |
acacaaaaccattgaaccagaatgaaggaatcaatgaagcagaagctcccgtgagcaagaagagaaattggggtggggttgtaattagaagtgagaataa |
100 |
Q |
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||||||||||| |||||||||| ||||||||||| |||| ||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
33484667 |
acacaaaaccactgaaccagaaagaaggaatcaacgaaggagatgctccggtgaggaagaagagaagtcggggtggggttgtaattagaagtgagaataa |
33484766 |
T |
|
| Q |
101 |
tattacaactggtgaagaaaaagataaaaagtatcgtgattttgatcatgaaatgcacattttgactgaaagagaaaggagaaagaaaatgaggaacatg |
200 |
Q |
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| T |
33484767 |
cattacaactgatgaaggagaagatagaaagtatcgtgattttgatcatgaaatgcacattttgactgaaagagaaaggagaaagaaaatgaggaacatg |
33484866 |
T |
|
| Q |
201 |
ttcgatagccttcatgccttgcttcctgaacttccttctaaggtaaattcattttcatcttcaatcagttcatagataatacttgcatg |
289 |
Q |
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| T |
33484867 |
tttgatagccttcatgccttgcttcctgaacttccttctaaggtaaattcattttcatcttcaatcagttcgaagataatacttgcatg |
33484955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 31819238 - 31819286
Alignment:
| Q |
166 |
ctgaaagagaaaggagaaagaaaatgaggaacatgttcgatagccttca |
214 |
Q |
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|||| |||||||||||||| |||||||||| |||||| ||||||||||| |
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| T |
31819238 |
ctgagagagaaaggagaaaaaaaatgaggagcatgttagatagccttca |
31819286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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