View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_low_21 (Length: 427)

Name: NF11729_low_21
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_low_21
NF11729_low_21
[»] chr1 (2 HSPs)
chr1 (6-411)||(15246885-15247289)
chr1 (214-320)||(17493307-17493412)
[»] chr7 (2 HSPs)
chr7 (134-412)||(18042754-18043038)
chr7 (264-320)||(48374215-48374271)
[»] chr2 (1 HSPs)
chr2 (275-395)||(32474394-32474514)
[»] chr5 (1 HSPs)
chr5 (273-395)||(17476479-17476599)
[»] scaffold0280 (1 HSPs)
scaffold0280 (340-395)||(1607-1662)
[»] chr3 (1 HSPs)
chr3 (300-390)||(45662450-45662540)
[»] chr4 (4 HSPs)
chr4 (264-320)||(1656183-1656239)
chr4 (350-410)||(9073721-9073781)
chr4 (301-411)||(20182754-20182865)
chr4 (275-320)||(7631952-7631997)
[»] chr6 (1 HSPs)
chr6 (303-411)||(33555232-33555339)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 411
Target Start/End: Original strand, 15246885 - 15247289
Alignment:
Q  6 agaagcagagagcaacgatgtgaagcacaaaaagccaaatgaaatttcattacttctaaaagaaaaagacaattatttttcccaccccttgagattctcg 105  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  15246885 agaaacagaaagcaacgatgtgaagcacaaaaagccaaatgaaatttcattacttctaaaagaaaaagactattatttttcccactccatgagattctcg 15246984  T
Q  106 cgcaccctannnnnnnnn-gaaaataccctttattcggattatgaaatccgagccaaattgtaagttttttcggattttgaaatccaaatttttgtaaag 204  Q
    |||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15246985 cgcaccctattttttttatgaaaataccctttattcggattatgaaatccgagccaaattgtaagttttttcggattttgaaatccaaatttttgtaaag 15247084  T
Q  205 aaaatgtattgtgattgatatcaaatgtctctagtgactatcttatgatccccacaaataactgctaagcaatttcagggattatatgagcgattaacag 304  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  15247085 aaaatgtattgtgattgatatcaaatgtctc--gtgactatcttatgatccccacaaataactgctaagcaatttcatggatcatatgagcgattaacag 15247182  T
Q  305 tgaccatgatatcatataatacctctaactaatagatgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatgttgaatcattgaag 404  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  15247183 tgaccatgatatcatataatacctctaactaataaatgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatgtttaagcattgaag 15247282  T
Q  405 gctattt 411  Q
    |||||||    
T  15247283 gctattt 15247289  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 17493307 - 17493412
Alignment:
Q  214 tgtgattgatatcaaatgtctctagtgactatcttatgatccccacaaataactgctaagcaatttcagggattatatgagcgattaacagtgaccatga 313  Q
    |||||| ||||||||| ||||||| |||| ||| || ||||||  |||| |||||| ||||||||| | ||||   ||||||| | |||| |||||||||    
T  17493307 tgtgatcgatatcaaaggtctctactgacaatcatacgatccctgcaaa-aactgcaaagcaatttgaaggatcgaatgagcggtcaacaatgaccatga 17493405  T
Q  314 tatcata 320  Q
    |||||||    
T  17493406 tatcata 17493412  T

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Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 134 - 412
Target Start/End: Original strand, 18042754 - 18043038
Alignment:
Q  134 tttattcggattatgaaatccgagccaaattgtaagttttttcggattttgaaatccaaatttttgtaaa-----gaaaatgtattgtgattgatatcaa 228  Q
    ||||||||||||||||||||| |  ||||||||| |  |||||||||| |||||||| |||| | || ||     |||| ||| ||||||||||| ||||    
T  18042754 tttattcggattatgaaatccaaatcaaattgtagggattttcggattctgaaatccgaattgtagtcaaaccaagaaactgtgttgtgattgatgtcaa 18042853  T
Q  229 atgtctctagtgactatcttatgatccccacaaataactgctaagcaatttcagggattatatgagcgattaacagtgaccatgatatcatataatacct 328  Q
    | ||||||   |||  |  || ||||||| |||| |||| |  | |||||||| || |  |||||||| | |||| |||||| ||||||||| |  |||     
T  18042854 aagtctctgcggaccgtagtacgatccccgcaaaaaactacacaacaatttcatgggtcgtatgagcggtcaacaatgaccaagatatcataaaccaccc 18042953  T
Q  329 ctaactaataga-tgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatgttgaatcattgaaggctatttt 412  Q
    |||||||| | | ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||  |||||||||||    
T  18042954 ctaactaaaaaaatgagaaataaaatgtaagaatgaatgagaagtgaagaaggaataaatatgttgaagcatataaggctatttt 18043038  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 48374215 - 48374271
Alignment:
Q  264 aactgctaagcaatttcagggattatatgagcgattaacagtgaccatgatatcata 320  Q
    |||||| || ||||||||| |||||||||||||||   |||| ||||||||||||||    
T  48374215 aactgcaaaacaatttcagagattatatgagcgatcggcagtaaccatgatatcata 48374271  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 395
Target Start/End: Original strand, 32474394 - 32474514
Alignment:
Q  275 aatttcagggattatatgagcgattaacagtgaccatgatatcatataatacctctaactaatagatgagaaataaaatgtaagaatgaataaaaagtga 374  Q
    ||||||||||||  ||| |||||| |||| ||| ||| |||||||| || ||| |||||||| | |||||||| |||||  ||||||  || | ||||||    
T  32474394 aatttcagggatcgtatcagcgatcaacaatgatcataatatcataaaacacccctaactaaaaaatgagaaagaaaataaaagaatagatgagaagtga 32474493  T
Q  375 agaaggaatgaatatgttgaa 395  Q
    ||||| |||||||||||||||    
T  32474494 agaagtaatgaatatgttgaa 32474514  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 17476479 - 17476599
Alignment:
Q  273 gcaatttcagggattatatgagcgattaacagtgaccatgatatcatataatacctctaact--aatagatgagaaataaaatgtaagaatgaataaaaa 370  Q
    ||||||| | ||||| |||||||| | | ||||||||||||||||||| || ||| ||||||  || | |||||||||||||||||||||| ||| | ||    
T  17476479 gcaattttaaggattgtatgagcggtcagcagtgaccatgatatcataaaacacccctaactaaaaaaaatgagaaataaaatgtaagaataaatgagaa 17476578  T
Q  371 gtgaagaaggaatgaatatgttgaa 395  Q
    |    |||||||| |||||||||||    
T  17476579 g----gaaggaataaatatgttgaa 17476599  T

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Target: scaffold0280 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 1607 - 1662
Alignment:
Q  340 atgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatgttgaa 395  Q
    |||||||| |||||||||||||||||   |||||||||| ||||||||||||||||    
T  1607 atgagaaagaaaatgtaagaatgaatgtgaagtgaagaaagaatgaatatgttgaa 1662  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 45662540 - 45662450
Alignment:
Q  300 aacagtgaccatgatatcatataatacctctaactaatagatgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatg 390  Q
    |||| ||||||||||||| || || ||  |||||||| | |||||||  ||  |||||| |||||| ||||||||||||||||||||||||    
T  45662540 aacaatgaccatgatatcctaaaacactcctaactaaaaaatgagaataaatttgtaaggatgaatgaaaagtgaagaaggaatgaatatg 45662450  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 1656239 - 1656183
Alignment:
Q  264 aactgctaagcaatttcagggattatatgagcgattaacagtgaccatgatatcata 320  Q
    |||||| ||||||||||||||||| |||||| | | || ||||||||||||||||||    
T  1656239 aactgcaaagcaatttcagggattgtatgaggggtcaatagtgaccatgatatcata 1656183  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 410
Target Start/End: Original strand, 9073721 - 9073781
Alignment:
Q  350 aaatgtaagaatgaataaaaagtgaagaaggaatgaatatgttgaatcattgaaggctatt 410  Q
    ||||||||||||| || | ||||||| ||||||||||||||||||| ||| ||| ||||||    
T  9073721 aaatgtaagaatggatgagaagtgaaaaaggaatgaatatgttgaagcatggaaagctatt 9073781  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 411
Target Start/End: Original strand, 20182754 - 20182865
Alignment:
Q  301 acagtgaccatgatatcatataatacctct-aactaatagatgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatgttgaatcat 399  Q
    ||||| |||||||||||||| || ||| || |||||| | |||||||| ||| || ||||||  || | |||||||||||| ||||| |||||||| |||    
T  20182754 acagtcaccatgatatcataaaacaccccttaactaaaatatgagaaagaaagtgaaagaattgatgagaagtgaagaagggatgaaaatgttgaagcat 20182853  T
Q  400 tgaaggctattt 411  Q
      ||||||||||    
T  20182854 gcaaggctattt 20182865  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 7631997 - 7631952
Alignment:
Q  275 aatttcagggattatatgagcgattaacagtgaccatgatatcata 320  Q
    ||||||||||||||||| |||| | | |||||||||||||||||||    
T  7631997 aatttcagggattatataagcggtcagcagtgaccatgatatcata 7631952  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 33555339 - 33555232
Alignment:
Q  303 agtgaccatgatatcatataatacctctaactaatagatgagaaataaaatgtaagaatgaataaaaagtgaagaaggaatgaatatgttgaatcattga 402  Q
    ||||| |||||||||||| || ||  |||||||| | | |||||  |||||||||||| | || | || ||||||| |||||||||||||||| |||  |    
T  33555339 agtgatcatgatatcata-aacactcctaactaaaaaacgagaaggaaaatgtaagaaagtatgagaaatgaagaatgaatgaatatgttgaaccatgca 33555241  T
Q  403 aggctattt 411  Q
    |||||||||    
T  33555240 aggctattt 33555232  T

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