View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_22 (Length: 414)
Name: NF11729_low_22
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 206 - 405
Target Start/End: Original strand, 12608306 - 12608505
Alignment:
| Q |
206 |
atataggaacagacttgatagttgatattcatgtgaacaaatattatgcaatttcttaacatgggactaaatgatggtaattgtcaatttgctatatatg |
305 |
Q |
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| T |
12608306 |
atataggaacagacttgatagttgatattcatgtgaacaactattatgtaatttcttaacatggggctaaatgatggtaattgtcaatttgctatatatg |
12608405 |
T |
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| Q |
306 |
ttatttaagcatgtatggttgagggatacatatttttctttgattacacatgtcctgagaaacattagacggtccttcactttacttgaattgatgtcca |
405 |
Q |
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| T |
12608406 |
ttatttaagcatgtatgattgagggatacatgtttttctttgattacacatgtcctgagaaacattagacggtccttcactttacttgaattgatgtcca |
12608505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 12608144 - 12608319
Alignment:
| Q |
18 |
attctagcttaccttccttcattcaccccaattcttacgcctttatttcctccgtaaacaaacttagatcaaacctttaatttagatggaaattatctat |
117 |
Q |
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| T |
12608144 |
attctagcttaccttccttcattcaccccaattcttacgcctttatttcctccataaacaaacttagatgaaacctttaatttagatggaaattatccat |
12608243 |
T |
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| Q |
118 |
ttgcgaacttaatatacattctgtaattgtaactttgattgttctatgtagcgaagaaaaacatataggaacagac |
193 |
Q |
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| T |
12608244 |
ttgcgaacttaatatacattcagtaattgtaactttgattgctctatgtagcgaagaaaaacatataggaacagac |
12608319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 16677991 - 16677911
Alignment:
| Q |
284 |
aattgtcaatttgctatatatgttatttaagcatgtatggttgagggatacatatttttctttgattacacatgtcctgag |
364 |
Q |
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| T |
16677991 |
aattgtaaatttgctatttatgttaatttagcatgtttggtttatggatacacatttttccttgattacacatgtcatgag |
16677911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 16678203 - 16678111
Alignment:
| Q |
80 |
cttagatcaaacctttaatttagatggaaattatctatttgcgaacttaatata----cattctgtaattgtaactttgattgttctatgtagc |
169 |
Q |
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| T |
16678203 |
cttagatcaaacctttaatt-agatcgaaatgttctttttgtggacttaatataataacattgtgtgattgtaactttgattgttctatgtagc |
16678111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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