View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_low_23 (Length: 408)

Name: NF11729_low_23
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_low_23
NF11729_low_23
[»] chr7 (4 HSPs)
chr7 (19-404)||(12018232-12018611)
chr7 (31-91)||(40692137-40692197)
chr7 (28-75)||(15743506-15743553)
chr7 (34-72)||(29418274-29418312)
[»] chr3 (11 HSPs)
chr3 (26-91)||(44211459-44211524)
chr3 (28-91)||(19316657-19316720)
chr3 (36-91)||(19319380-19319435)
chr3 (28-75)||(30574631-30574678)
chr3 (28-75)||(6530083-6530130)
chr3 (28-75)||(30575792-30575839)
chr3 (31-83)||(54358993-54359046)
chr3 (31-83)||(54361235-54361288)
chr3 (28-72)||(43679036-43679080)
chr3 (28-75)||(6528994-6529041)
chr3 (130-164)||(40384865-40384899)
[»] scaffold0242 (4 HSPs)
scaffold0242 (31-82)||(11667-11718)
scaffold0242 (31-82)||(20502-20553)
scaffold0242 (28-82)||(7058-7112)
scaffold0242 (28-82)||(9362-9416)
[»] chr6 (2 HSPs)
chr6 (31-91)||(30575024-30575085)
chr6 (28-75)||(29657464-29657511)
[»] chr2 (4 HSPs)
chr2 (31-91)||(3029956-3030017)
chr2 (28-75)||(4518981-4519028)
chr2 (28-75)||(44112948-44112995)
chr2 (31-75)||(19019674-19019718)
[»] chr1 (9 HSPs)
chr1 (28-75)||(44031568-44031615)
chr1 (31-81)||(21899525-21899576)
chr1 (28-75)||(28876765-28876812)
chr1 (28-75)||(37811035-37811082)
chr1 (28-74)||(19620367-19620413)
chr1 (28-74)||(51837771-51837817)
chr1 (31-83)||(41642217-41642270)
chr1 (31-91)||(44611944-44612005)
chr1 (35-75)||(14642631-14642671)
[»] chr5 (4 HSPs)
chr5 (31-75)||(27439060-27439104)
chr5 (28-75)||(41422465-41422512)
chr5 (31-83)||(14248554-14248607)
chr5 (39-91)||(41574213-41574266)
[»] chr8 (4 HSPs)
chr8 (31-81)||(30955175-30955226)
chr8 (31-81)||(30957828-30957879)
chr8 (31-72)||(36824590-36824631)
chr8 (280-313)||(40996402-40996435)
[»] chr4 (4 HSPs)
chr4 (28-75)||(30101577-30101624)
chr4 (28-75)||(30100432-30100479)
chr4 (34-72)||(56331997-56332035)
chr4 (35-75)||(42819464-42819504)
[»] scaffold0167 (1 HSPs)
scaffold0167 (26-75)||(24881-24930)


Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 12018611 - 12018232
Alignment:
Q  19 accttgaggttgggcagagagagaaatatctcttatctgaggagcttttgctctgggttacaggagttttcttttccttctataagacatctgttttcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12018611 accttgaggttgggcagagagagaaatatctcttatctgaggagcttttgctctgggttacaggagttttcttttccttctataagacatctgttttcaa 12018512  T
Q  119 tcaatacttcttccatctcattataagtgtctcatttgctatatttacatgtttcaaattatttgtctctttatatttacaacgaagcattaattacttt 218  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12018511 tcaatacttcttccatctcattataagtgtctcgtttgctatatttacatgtctcaaattatttgtctctttatatttacaacgaagcattaattacttt 12018412  T
Q  219 ttctactaatatatccttatctattgtatgtatcttaactctaactacttcactaacgacaaataagggtgttttagtaaatgaaacttattttatgatt 318  Q
    ||||| |||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12018411 ttctagtaatatatccttatctatt----gtatcttaactctaactacttcactaacgataaataagggtgttttagtaaatgaaacttattttatgatt 12018316  T
Q  319 aaaaaaccattacaactaaggattgtgtacaacccaaacgagacactagcaaatagacggcagacgtaatataatctctgcttctc 404  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  12018315 --aaaaccattacaactaaggattgtgtacaacccaaacgagacactagcaaatagacagcagacgtaatataatttctgcttctc 12018232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 40692137 - 40692197
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctctgggttacaggagttttctt 91  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||    
T  40692137 ggcagagagagaaatgtctcttctctgaggagcttttgctctggggtacaggggttttctt 40692197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 15743506 - 15743553
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||    
T  15743506 ttgggcagagagagagatgtctcttctctgaggagcttttgctctggg 15743553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 29418312 - 29418274
Alignment:
Q  34 agagagagaaatatctcttatctgaggagcttttgctct 72  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  29418312 agagagagaaatgtctcttctctgaggagcttttgctct 29418274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 44211459 - 44211524
Alignment:
Q  26 ggttgggcagagagagaaatatctcttatctgaggagcttttgctctgggttacaggagttttctt 91  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||    
T  44211459 ggttgggcagagagagaaatgtctcttctctgaggagcttttgctctgggttacaggggttatctt 44211524  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 19316657 - 19316720
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctgggttacaggagttttctt 91  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||    
T  19316657 ttgggcagagagagaaatgtctcttctctgaggagcttttgctctgggttacaggggttatctt 19316720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 19319380 - 19319435
Alignment:
Q  36 agagagaaatatctcttatctgaggagcttttgctctgggttacaggagttttctt 91  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||    
T  19319380 agagagaaatgtctcttctctgaggagcttttgctctgggttacaggggttatctt 19319435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 30574678 - 30574631
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  30574678 ttgggcagagagagaaatgtctcttctctgaggagcttttgctctggg 30574631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 6530130 - 6530083
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  6530130 ttgggcagaaagagaaatgtctcttctctgaggagcttttgctctggg 6530083  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 30575839 - 30575792
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  30575839 ttgggcagagagagaaatgtctcttctctgaggagcttttgctttggg 30575792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 54358993 - 54359046
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacagga 83  Q
    |||||||||||||| ||||||| |||||||||||| |||||| |||||||||||    
T  54358993 ggcagagagagaaacatctcttctctgaggagcttctgctctagggttacagga 54359046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 54361235 - 54361288
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacagga 83  Q
    |||||||||||||| ||||||| |||||||||||| |||||| |||||||||||    
T  54361235 ggcagagagagaaacatctcttctctgaggagcttctgctctagggttacagga 54361288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 43679036 - 43679080
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctct 72  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||    
T  43679036 ttgggcagagagagaaatgtctcttctctgaggagcgtttgctct 43679080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 6529041 - 6528994
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||| |||||||| |||||| | ||||||||||||||||||||    
T  6529041 ttgggcagaaagagaaatgtctcttctttgaggagcttttgctctggg 6528994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 40384899 - 40384865
Alignment:
Q  130 tccatctcattataagtgtctcatttgctatattt 164  Q
    |||||||||||||||||||||||||||| ||||||    
T  40384899 tccatctcattataagtgtctcatttgcaatattt 40384865  T

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Target: scaffold0242 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 11667 - 11718
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctctgggttacagg 82  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  11667 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggttacagg 11718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 20502 - 20553
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctctgggttacagg 82  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  20502 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggttacagg 20553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 7058 - 7112
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctgggttacagg 82  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  7058 ttgggcagagagagaaatgtcttttctctgaggagcttttgctctgggttacagg 7112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 9362 - 9416
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctgggttacagg 82  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  9362 ttgggcagagagagaaatgtcttttctctgaggagcttttgctctgggttacagg 9416  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 30575085 - 30575024
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacaggagttttctt 91  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||    
T  30575085 ggcagagagagaaatgtctcttctctgaggagcttttgctctggggttacaggggttttctt 30575024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 29657464 - 29657511
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| || |||||| ||||||||||||||||| ||||    
T  29657464 ttgggcagagagagagatgtctcttctctgaggagcttttgctttggg 29657511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 3030017 - 3029956
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacaggagttttctt 91  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||||    
T  3030017 ggcagagagagaaatgtctcttatctgaggagcttttgctatggggttacaggggttttctt 3029956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 4518981 - 4519028
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  4518981 ttgggcagagagagaaatgtctcttctctgaggagcttttgctctggg 4519028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 44112995 - 44112948
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||||    
T  44112995 ttgggcagagagagaaatgtctcttctctgaggagctgttgctctggg 44112948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 19019718 - 19019674
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| |||||| ||||||| ||||||||| ||||    
T  19019718 ggcagagagagaaatgtctcttctctgaggggcttttgctatggg 19019674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 44031615 - 44031568
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  44031615 ttgggcagagagagaaatgtctcttctctgaggagcttttgctctggg 44031568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 21899525 - 21899576
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacag 81  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  21899525 ggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacag 21899576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 28876765 - 28876812
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||    
T  28876765 ttgggcagagagagagatgtctcttctctgaggagcttttgctctggg 28876812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 37811035 - 37811082
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||||    
T  37811035 ttgggcagagacagaaatgtctcttctctgaggagcttttgctctggg 37811082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 19620413 - 19620367
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctgg 74  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||    
T  19620413 ttgggcagagagagaaatgtctcttctctgaggagctcttgctctgg 19620367  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 51837771 - 51837817
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctgg 74  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||    
T  51837771 ttgggcagagagagagatgtctcttctctgaggagcttttgctctgg 51837817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 41642217 - 41642270
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacagga 83  Q
    ||||||||||||||| |||||| |||||||||||| |||||| |||||||||||    
T  41642217 ggcagagagagaaatgtctcttctctgaggagcttctgctctagggttacagga 41642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 44611944 - 44612005
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgct-ctgggttacaggagttttctt 91  Q
    ||||||||||||||| |||||| ||||||| ||||||||| | |||||||||| ||||||||    
T  44611944 ggcagagagagaaatgtctcttctctgaggggcttttgctacggggttacaggggttttctt 44612005  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 14642631 - 14642671
Alignment:
Q  35 gagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
T  14642631 gagagagaaatatttcttctttgaggagcttttgctctggg 14642671  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 27439104 - 27439060
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  27439104 ggcagagagagaaatatctcttctctgaggagcttatgctctggg 27439060  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 41422465 - 41422512
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||    
T  41422465 ttgggcagagagagagatgtctcttctctgaggagcttttgctctggg 41422512  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 14248607 - 14248554
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacagga 83  Q
    |||||||||||||| ||||||| |||||||||||| |||||| |||||||||||    
T  14248607 ggcagagagagaaacatctcttctctgaggagcttctgctctagggttacagga 14248554  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 41574266 - 41574213
Alignment:
Q  39 gagaaatatctcttatctgaggagcttttgctct-gggttacaggagttttctt 91  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||| ||| ||||    
T  41574266 gagaaatgtctcttctctgaggagcttttgctctggggttacaggggttatctt 41574213  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 30955226 - 30955175
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacag 81  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  30955226 ggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacag 30955175  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 30957879 - 30957828
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacag 81  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  30957879 ggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacag 30957828  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 36824590 - 36824631
Alignment:
Q  31 ggcagagagagaaatatctcttatctgaggagcttttgctct 72  Q
    ||||||||||||||| |||||| |||||||||||| ||||||    
T  36824590 ggcagagagagaaatgtctcttctctgaggagcttatgctct 36824631  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 40996435 - 40996402
Alignment:
Q  280 aataagggtgttttagtaaatgaaacttatttta 313  Q
    ||||||||||||||||||||||||||| ||||||    
T  40996435 aataagggtgttttagtaaatgaaactaatttta 40996402  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30101577 - 30101624
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| || |||||| ||||||||||||||||||||||    
T  30101577 ttgggcagagagagagatgtctcttctctgaggagcttttgctctggg 30101624  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 30100432 - 30100479
Alignment:
Q  28 ttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||||||| || |||||| ||||||||||||||||| ||||    
T  30100432 ttgggcagagagagagatgtctcttctctgaggagcttttgctttggg 30100479  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 56331997 - 56332035
Alignment:
Q  34 agagagagaaatatctcttatctgaggagcttttgctct 72  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  56331997 agagagagaaatgtctcttctctgaggagcttttgctct 56332035  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 42819464 - 42819504
Alignment:
Q  35 gagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    ||||||||||| |||||| ||||||||||| ||||||||||    
T  42819464 gagagagaaatgtctcttctctgaggagctcttgctctggg 42819504  T

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Target: scaffold0167 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 24930 - 24881
Alignment:
Q  26 ggttgggcagagagagaaatatctcttatctgaggagcttttgctctggg 75  Q
    |||| |||||||||||||||||||||| | |||||||||| |||| ||||    
T  24930 ggtttggcagagagagaaatatctcttctttgaggagcttctgctttggg 24881  T

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