View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_24 (Length: 388)
Name: NF11729_low_24
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 2708749 - 2708531
Alignment:
| Q |
18 |
acaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaagatatgcctcctatgaggttgggttt |
117 |
Q |
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| T |
2708749 |
acaacgctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatctcgccgttcaagatatgcctccgatgaggttgggttt |
2708650 |
T |
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| Q |
118 |
gtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaatgtttagcactaatg |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2708649 |
gtctggtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaatgttaagcactaatg |
2708550 |
T |
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| Q |
218 |
caaatgtttgtatattgtt |
236 |
Q |
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||||||||||||||||||| |
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| T |
2708549 |
caaatgtttgtatattgtt |
2708531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 2702805 - 2702663
Alignment:
| Q |
23 |
gctgttatggagctaatgcgaggtattcgatatcagttgacagaacttgtaactgatcttgccgttcaagatatgcctcctatgaggttgggtttgtctc |
122 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||| |||||| || || |||||||| ||| |||| ||||| ||||||||||||| |
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| T |
2702805 |
gctgttatggagataatgcgaggtattcgatatcagttgacggaactcataactggcctcgctgttcaagacatggctccgatgagcttgggtttgtctc |
2702706 |
T |
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| Q |
123 |
gtagcctatcaatatacaagttgaagcatagtgcagacaaggt |
165 |
Q |
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| T |
2702705 |
atagcctatcaagatacaagttgaagttcagtgcagacaaggt |
2702663 |
T |
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