View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11729_low_25 (Length: 382)
Name: NF11729_low_25
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 43096873 - 43096517
Alignment:
| Q |
19 |
agaaccctgagaaagattgaagcgaaacgaatattttctcccgacgtccatcttgtaaaataaattcattgcttcctcaagatttttagctttgca-agt |
117 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43096873 |
agaaccttgagaaagactgaagcgaaacgaatattttctcccgacgtccatcttgtaaaataaattcattgcttcctcaagatttttagctttgcacagt |
43096774 |
T |
|
| Q |
118 |
ccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
43096773 |
ccatttataagcgcattgaaggtcacaatcgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcaacaaccattcctcacttac |
43096674 |
T |
|
| Q |
218 |
acatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataaacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43096673 |
acatttcacatatgagaattgtgtgcgtgcaaacattgcgctcggaaatttcaagatgaagagactgtgctcgattcaaaagacctacatcacataaacc |
43096574 |
T |
|
| Q |
318 |
ttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43096573 |
ttgaattacaacattgtagcaataagcatcatgagttaaacctatttgattcatctc |
43096517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 17487682 - 17488041
Alignment:
| Q |
16 |
accagaaccctgagaaagattgaagcgaaacgaatattttctcccgacgtccatcttgtaaaataaattcattgcttcctcaagatttttagctttgca- |
114 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||||| | |||||||||| |||| |||| |||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
17487682 |
accagaaccctgagaaagactgaggtgtaacgaatgtcttctcccgacctccaacttgcaaaataaattttttgctttctcaagattattagctttgcac |
17487781 |
T |
|
| Q |
115 |
agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgct |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17487782 |
agtccatttataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgct |
17487881 |
T |
|
| Q |
215 |
tacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17487882 |
tacacatttcacatatgagaattgtgtgcgtgcaaacattgtgctcggaaatttcaagacgaagagactgtgctcgattcaaaagacctacatcacataa |
17487981 |
T |
|
| Q |
315 |
accttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctc |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
17487982 |
accttgaattacagcattgtagcaataagcatcaggagttaaacctatctgagtcatctc |
17488041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 6779396 - 6779037
Alignment:
| Q |
16 |
accagaaccctgagaaagattgaagcgaaacgaatattttctcccgacgtccatcttgtaaaataaattcattgcttcctcaagatttttagctttgca- |
114 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||||| | ||||||| || |||| |||| |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
6779396 |
accagaaccctgagaaagactgaggtgtaacgaatgtcttctcccaacctccaacttgcaaaataaattttttgctttctcaagatttttagctttgcac |
6779297 |
T |
|
| Q |
115 |
agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgct |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6779296 |
agtccatttataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgct |
6779197 |
T |
|
| Q |
215 |
tacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6779196 |
tacacatttcacatatgagaattgtgtgcgtgcaaacattgtgctcggaaatttcaagactaagagactgtgctcgattcaaaagatctacatcacataa |
6779097 |
T |
|
| Q |
315 |
accttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctc |
374 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
6779096 |
accttgaattacagcattgtagcaataagaatcaggagttaaacctatctgagtcatctc |
6779037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 375
Target Start/End: Complemental strand, 22423968 - 22423608
Alignment:
| Q |
16 |
accagaaccctgagaaagattgaagcgaaacgaatattttctcccgacgtccatcttgtaaaataaattcattgcttcctcaagatttttagctttgca- |
114 |
Q |
| |
|
||||||||| ||||||||| ||| | | |||||| | |||||||||| |||| |||| |||||||| | |||||| ||||||||| ||||||||||| |
|
|
| T |
22423968 |
accagaaccttgagaaagactgaggtgtaacgaaagtcttctcccgacctccaacttgcaaaataaaatttttgctttctcaagattattagctttgcac |
22423869 |
T |
|
| Q |
115 |
agtccatttataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgct |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22423868 |
agtccatttataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgct |
22423769 |
T |
|
| Q |
215 |
tacacatttcacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaaagacttacatcacataa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
22423768 |
tacacatttcacatatgagaattgtgtgcgtgcaaacattgtgctcagaaatttcaagaagaagagaatgtgctcgattcaaaagacctacatcacataa |
22423669 |
T |
|
| Q |
315 |
accttgaattacaacattgtagcaataagcatcaggagttaaacctatttgattcatctca |
375 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
22423668 |
accttgaattacagcattgtagcaataagcatcaggagttaaacctatctgagtcatctca |
22423608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University