View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_3 (Length: 651)
Name: NF11729_low_3
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 10 - 647
Target Start/End: Complemental strand, 8567365 - 8566722
Alignment:
| Q |
10 |
atagtgtgaggttcttaaaggtttgaggttgga------tcatacccatagctttaggagggtgaaactttatgttgaatataatgtagttttcttaagt |
103 |
Q |
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| T |
8567365 |
atagtgtgaggttcttaaagatttgaggttggacttggatcaaacccatagctttaggagggtgaaactttatgttgaatataatgtagttttcttaagt |
8567266 |
T |
|
| Q |
104 |
gtttagttagatgttttcaaatatttgagagtttgatgattgatttctttagaaaatttgtaatttaataagagatgtcttgaaattgtcgagtttatca |
203 |
Q |
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| T |
8567265 |
gtttagttagatgttttcaaatatttgagagtttgatgattgatttctttagaaaatttgtaatttaataaaagatgtcttgaaattgtcgagtttatca |
8567166 |
T |
|
| Q |
204 |
caacaaagaacaatccaaatctcaatcctttcaattgttatgggaattcaagtataatggcaaggtaactctaaaataattaatgtcatcttcaaggtac |
303 |
Q |
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| T |
8567165 |
caacaaagaacaatccaaatctcaatcctttcaattgttatgggaattcaagtataatggcaaggtaactctaaaataattaatgtcatcttcaaggtac |
8567066 |
T |
|
| Q |
304 |
aaagacgtgctttacaaacataaccctcttctctcatggttgttatgttggtaaaatccattaaatccaattacctatgtcaccccaagagtttttagac |
403 |
Q |
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| T |
8567065 |
aaagacgtgctttacaaacataaccctcttctctcatggttgttatgttgctaaaatccattaaatccaattacctatgtcaccccaagagtttatagac |
8566966 |
T |
|
| Q |
404 |
tactctaatgtttacaaatccttgtctaatcttataagttcaacaatatccaatatctttctataaatattgttgccttgatttttcttaaaagcaataa |
503 |
Q |
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| T |
8566965 |
tactctcatgtttacaaatccttgtctaatcttataagttcaacaatatccactatctttctataaatattgttgccttgatttttcttaaaagcaataa |
8566866 |
T |
|
| Q |
504 |
aattagattggactttgaaacaccacaataaaagaaaataaagagatcatggatagttcattctggtggggcttctaacacatacattgcatgtattcca |
603 |
Q |
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| T |
8566865 |
aattagattggactttgaaacaccacaataaaagaaaataaagagatcatggatagttcatcctggtggggcttctaacacatatattgcatgtatttca |
8566766 |
T |
|
| Q |
604 |
tccaagtgagacttataattcacacttgacatataacaactcat |
647 |
Q |
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| T |
8566765 |
tacaagtgggacttataactcacacttgacatataacaactcat |
8566722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 540
Target Start/End: Complemental strand, 42452316 - 42452252
Alignment:
| Q |
476 |
ttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaa |
540 |
Q |
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|||| |||||||||||||||| | |||| ||||||||||||||||||| |||||| |||||||| |
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| T |
42452316 |
ttgctttgatttttcttaaaaacgataagattagattggactttgaaatcccacaacaaaagaaa |
42452252 |
T |
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