View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_31 (Length: 309)
Name: NF11729_low_31
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 53492455 - 53492176
Alignment:
| Q |
1 |
aggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcaggtactttctttttt |
100 |
Q |
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| T |
53492455 |
aggggacatcgtgacttgcctttgaaactcaatcaatggtgcaatgttgttagatgggtggtcggagatcccacaccattcatcaggtactttctttttt |
53492356 |
T |
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| Q |
101 |
accatgttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaaaaat |
200 |
Q |
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| T |
53492355 |
accatcttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaaaaat |
53492256 |
T |
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| Q |
201 |
tgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccattttctttttgaatggattttcatct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492255 |
tgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccattttctttttgaatggattttcatct |
53492176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 53500375 - 53500118
Alignment:
| Q |
1 |
aggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcaggtactttctttttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
53500375 |
aggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccgttcatcaggtactttttttttt |
53500276 |
T |
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| Q |
101 |
accatgttttcctttttccatgttataacaatgtgttggctgctgtaacgtaatgaaaactttcaagctttatataagaggcttaaacaattccaaaaat |
200 |
Q |
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| T |
53500275 |
accatcttttcctttttccatgttataatgatgtgttggttgatgtaacgtaa-caaaactttcaagct-------------ttaaaaaattctaaaaat |
53500190 |
T |
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| Q |
201 |
tgatattatgcattgtagttatatgtcttacataatgccttaaaattctgcccattttctttttgaatggat |
272 |
Q |
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| T |
53500189 |
tgatattatgcgttgtagttttatgtcttacataatgccttaaagttctgcacattttctttttgaatggat |
53500118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16071570 - 16071454
Alignment:
| Q |
1 |
aggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcaggtac--tttctttt |
98 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||| || ||| |||| |
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| T |
16071570 |
aggggacaccgcgacttgcctttgaaacttaatcaatggtgcaatgcggttagatgggtggttggagatcccataccattaatcaggcactttttttttt |
16071471 |
T |
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| Q |
99 |
ttaccatgttttccttt |
115 |
Q |
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| T |
16071470 |
ttaccatgttttccttt |
16071454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 45353620 - 45353706
Alignment:
| Q |
1 |
aggggacatcgtgacttgcctttgaaacttaatcaatggtgcaatgctgttagatgggtggtcggagatcccacaccattcatcagg |
87 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| | || | |||||||||||||||||||| |
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| T |
45353620 |
aggggacatcgtgacttgcctttgaagcttaatcagtggtgcaatgttgttagatgggagttcagcaatcccacaccattcatcagg |
45353706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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