View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_low_32 (Length: 304)

Name: NF11729_low_32
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_low_32
NF11729_low_32
[»] chr4 (1 HSPs)
chr4 (59-298)||(26572908-26573162)
[»] chr2 (10 HSPs)
chr2 (63-298)||(10378012-10378263)
chr2 (184-288)||(10350221-10350325)
chr2 (207-298)||(10345736-10345827)
chr2 (123-298)||(10342064-10342254)
chr2 (190-263)||(10369915-10369988)
chr2 (207-298)||(10339246-10339337)
chr2 (123-179)||(10363499-10363555)
chr2 (59-143)||(10369750-10369832)
chr2 (212-246)||(10363579-10363613)
chr2 (123-179)||(10368772-10368828)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 59 - 298
Target Start/End: Original strand, 26572908 - 26573162
Alignment:
Q  59 attcaatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacatacaaacactgaagatatgaaataaattttctct 158  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26572908 attcaatcaattccaaacaaaaaagaaagcctcgcctaaaaggaaaatgtgctctgcaaattgacatacaaacactgaagatatgaaataaattttctct 26573007  T
Q  159 aacatttatctgttgataacataat---------------agtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaa 243  Q
    |||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573008 aacatttatctgttgataacataatcaccaaaacagtatgagtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaa 26573107  T
Q  244 ttttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26573108 ttttttctttcacattctctgaaatttgtttaagaatgatttctttctcttcttc 26573162  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 63 - 298
Target Start/End: Original strand, 10378012 - 10378263
Alignment:
Q  63 aatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacatacaaacactgaagatatgaaataaattttctctaaca 162  Q
    |||||||||||||||||||  |||||| |  ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10378012 aatcaattccaaacaaaaagaaaaacc-cacctaaaaggaaaatgtgcactgcaaattcacatacaaacactgaagatatgaaataaattttctctaaca 10378110  T
Q  163 tttatctgttgataacataat---------------agtttaaccttttatgc--atggttgagccctaaagttcttagttctgcaatccttcatcaatt 245  Q
    || |||||||| ||||| |||               ||||| |||||||||||  ||||| |||  |||||| ||||||||||||| |||||||||||||    
T  10378111 ttcatctgttgctaacaaaatcaccaaaaaagtatgagtttgaccttttatgcatatggtagagtactaaaggtcttagttctgcattccttcatcaatt 10378210  T
Q  246 ttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 298  Q
    | ||||| ||||||||||  ||||||||| |||||| |||||| |||||||||    
T  10378211 tcttcttccacattctctagaatttgtttcagaatgttttcttcctctgcttc 10378263  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 10350221 - 10350325
Alignment:
Q  184 agtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgat 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||| |    
T  10350221 agtttaaccttttatgcatggttgagccctaaagttcttagttctgcattccttcatcaattttttctgtcacattctctgaaattttcttaagaatgtt 10350320  T
Q  284 ttctt 288  Q
    |||||    
T  10350321 ttctt 10350325  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 10345736 - 10345827
Alignment:
Q  207 gagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 298  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| |||| ||||    
T  10345736 gagccctgaagttcttagttctgcattccttcatcaattttttctttcacattctctgaaattttcttaagaatgttttcttcctcttcttc 10345827  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 298
Target Start/End: Original strand, 10342064 - 10342254
Alignment:
Q  123 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataat---------------agtttaaccttttatgcatggttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||               ||||||||| ||||||||||||      
T  10342064 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgttaacaaaatcaccaaaaaagtatgagtttaaccatttatgcatggtaa 10342163  T
Q  208 agccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 298  Q
    ||  ||||| | ||||||||| |  |||||||||||||| ||||| |||||||||   ||||||||| |||| | ||||||  ||||||||    
T  10342164 agtactaaaatacttagttctactttccttcatcaatttcttcttccacattctcaagaatttgtttcagaacgttttcttcatctgcttc 10342254  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 10369915 - 10369988
Alignment:
Q  190 accttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctct 263  Q
    |||||||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  10369915 accttttatgcatggtggagcacttaagttcttagttctgcattccttcatcaatttcttcttccacattctct 10369988  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 10339246 - 10339337
Alignment:
Q  207 gagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 298  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||||| |||| ||||    
T  10339246 gagcactaaagttcttggttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctcttcttc 10339337  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 10363499 - 10363555
Alignment:
Q  123 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataaca 179  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  10363499 catacaaacaccgaagatatgaaataaattttctctaacatttatctcttgttaaca 10363555  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 10369750 - 10369832
Alignment:
Q  59 attcaatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacatacaaacactgaagatatg 143  Q
    ||||||||||||  |||||||||| |||   || | ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  10369750 attcaatcaattataaacaaaaaaaaaat--tcaattaaaaggaaaatgtgctctgcaaattcacatacaaacactgaagatatg 10369832  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 246
Target Start/End: Original strand, 10363579 - 10363613
Alignment:
Q  212 ctaaagttcttagttctgcaatccttcatcaattt 246  Q
    |||||||||||||||||||| ||||||||||||||    
T  10363579 ctaaagttcttagttctgcattccttcatcaattt 10363613  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 10368772 - 10368828
Alignment:
Q  123 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataaca 179  Q
    ||||||| || ||||||| ||||| |||||||||| ||||||||||| ||| |||||    
T  10368772 catacaatcagtgaagatgtgaaacaaattttctccaacatttatcttttgttaaca 10368828  T

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