View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_34 (Length: 297)
Name: NF11729_low_34
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 35744185 - 35743900
Alignment:
| Q |
1 |
atcttgtctgtgatttggacacaaatgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744185 |
atcttgtctgtgatttggacacaaatgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccactatctcctaa |
35744086 |
T |
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| Q |
101 |
acaatttcaaccaaattctcctaaaccaacacaaacaccttctcatctgcaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744085 |
acaatttcaaccaaattctcctaaaccaacacaaacaccttctcatctacaacaagcatcaatgtctatttcttcatcttctcccccaccccctcctccc |
35743986 |
T |
|
| Q |
201 |
ctacctgcaccattcacgataatgccnnnnnnngtacagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
289 |
Q |
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||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743985 |
ctacctgcaccattc---atgatgccaaaaaaagtacagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
35743900 |
T |
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