View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_35 (Length: 291)
Name: NF11729_low_35
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 45543509 - 45543790
Alignment:
| Q |
1 |
gatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatttttcagtttctgagg |
100 |
Q |
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| T |
45543509 |
gatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatttttcagtttctgagg |
45543608 |
T |
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| Q |
101 |
gaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagttcccgttccctcattactaccagtgctagtaccatcatt |
200 |
Q |
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| T |
45543609 |
gaatttcatggtttatattgatatccgtggatgctgtttcccgaggatattcattctgagttccagttccctcattactaccagtgctagtaccatcatt |
45543708 |
T |
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| Q |
201 |
actgagcttagaagtttcatcattttcaaaagggagagttttatcaacttttgttccagaagagattacatcaacttcatct |
282 |
Q |
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| T |
45543709 |
actgagcttagaagtttcatcattttcaaaagggagagttttatcaacttttgttccagaagagattacatcaacttcatct |
45543790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 45543922 - 45544078
Alignment:
| Q |
6 |
tgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatttttcagtttctgagggaatt |
105 |
Q |
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| T |
45543922 |
tgtttcttgaggatattcattctgaatttctgttgcatcagattgatttccaacagtatttgtgacggcgttgaaagatttttcagtttctgagggaatt |
45544021 |
T |
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| Q |
106 |
tcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtt |
162 |
Q |
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| T |
45544022 |
tcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtt |
45544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 45543137 - 45543259
Alignment:
| Q |
166 |
gttccctcattactaccagtgctagtaccatcattactgagcttagaagtttcatc------attttcaaaagggagagttttatcaacttttgttccag |
259 |
Q |
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| T |
45543137 |
gttccctcattactaccaatgctagttccatcattactgagcttagaagtttcatcatttttattttcaagagggagagttttatcaacttttgttccag |
45543236 |
T |
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| Q |
260 |
aagagattacatcaacttcatct |
282 |
Q |
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| T |
45543237 |
aagagattacttcaacttcatct |
45543259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 45543380 - 45543538
Alignment:
| Q |
1 |
gatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtgacggcattgaaagatttttcagtttctgagg |
100 |
Q |
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| T |
45543380 |
gatactgtttcttgaggatattcactctgagtttctgctgcatcagattgattttcaacattgtatgtgatggtgttgaaagtttcttcagtttctgagg |
45543479 |
T |
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| Q |
101 |
gaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctga |
159 |
Q |
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| T |
45543480 |
gaatttcatggtttcttttgacatctgacgatactgtttcttgaggatattcattctga |
45543538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 45543850 - 45543946
Alignment:
| Q |
63 |
gtttgtgacggcattgaaagatttttcagtttctgagggaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctga |
159 |
Q |
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| T |
45543850 |
gtttgtgaaggtgttgaaagtttcttcagtttctgagggaatttcatggtttctattgatatctgcggatgttgtttcttgaggatattcattctga |
45543946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 45543348 - 45543412
Alignment:
| Q |
98 |
agggaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtt |
162 |
Q |
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| T |
45543348 |
agggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtt |
45543412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 45530284 - 45530373
Alignment:
| Q |
193 |
ccatcattactgagcttagaagtttcatcattttcaaaagggagagttttatcaacttttgttccagaagagattacatcaacttcatct |
282 |
Q |
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| T |
45530284 |
ccattattattgagcttagaagtttcataattgtcaagtgggagagttttaacagctattgttgcagaagtgattacatcaactccatct |
45530373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 45544935 - 45544981
Alignment:
| Q |
116 |
tattgatatctgtggatgctgtttcccgaggatattcattctgagtt |
162 |
Q |
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| T |
45544935 |
tattgatatctgtggacaatgtttcctgaggatattcattctgagtt |
45544981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 45548598 - 45548650
Alignment:
| Q |
194 |
catcattactgagcttagaagtttcatcattttcaaaagggagagttttatca |
246 |
Q |
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| T |
45548598 |
catcatttccgagcttagaagcttcgtcattttcaggagggagagttttatca |
45548650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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