View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_37 (Length: 276)
Name: NF11729_low_37
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 37571424 - 37571658
Alignment:
| Q |
11 |
catagggcctatgataggatttcttggaaatttatcagctactgtttagatgagcttatttgggtaatgggcaggacaccatattttggacagacaaact |
110 |
Q |
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| T |
37571424 |
catagggcatatgataggatttcttggaaatttatcagctactgtttagatgagcttatttgggtaatgggcaggacaccatattttggacagacaaact |
37571523 |
T |
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| Q |
111 |
gtctggtggacagtaactttactcttaaagatcaaagaagattacatttcaaatttgatttgattcaaaaatgtaaaattatacatatgtt---nnnnnn |
207 |
Q |
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| T |
37571524 |
gtctggtggacagtaactttactcttaaagatcaaagaagattacatttcaaatttgatttgattcaaaaatgtaaaattat--atatgttaaaaaaaaa |
37571621 |
T |
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| Q |
208 |
ntcaattatttgattaataaaagtagggaactgaaaa |
244 |
Q |
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| T |
37571622 |
atcaattatttgattaataaaagtagggaactgaaaa |
37571658 |
T |
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