View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11729_low_39 (Length: 275)
Name: NF11729_low_39
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 40435837 - 40436090
Alignment:
| Q |
1 |
cagatagtggataacgaatcctgttggcatactgaaaagaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40435837 |
cagatagtggataacgaatcctgttggcatactgaaaagaaacaatgcctccattttgaagaatcttgccattattaacaagacattcatttttattgag |
40435936 |
T |
|
| Q |
101 |
gcgtttgaaaattgttggcttgataaaatgtgcagagcttaaaccaccacaagcaacatgaatgttatgttagagattttgcatcctctcacacatgtat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40435937 |
gcgtttgaaaattgttggtttgataaaatgtgcagagcttaaaccaccacaagcaacatga-----atgttagagattttgcatcctctcacacatgtat |
40436031 |
T |
|
| Q |
201 |
ttgctatctcaactatgtatgttgtaatgccattaattgatctagctgaactttggttt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40436032 |
ttgctatctcaactatgtatgttgtaatgccattaattgatctagctgaactttggttt |
40436090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 40432296 - 40432456
Alignment:
| Q |
74 |
attaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcagagcttaaaccaccacaagcaacatgaatgttatgttag |
173 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| | || ||||||| | || |||||| || ||||||||||||||||||| | |
|
|
| T |
40432296 |
attaacaagacaatcattatacttgaggcgtttgaaaatattagggttgataagacgtacagagccgaacttgccacaagcaacatgaatgtcaa----- |
40432390 |
T |
|
| Q |
174 |
agattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgccattaattg |
239 |
Q |
| |
|
| || ||||||||||||| ||||||||||| ||| |||||| ||| ||||| ||||||||| |||| |
|
|
| T |
40432391 |
aaatgttgcatcctctcaaacatgtatttgatatttcaactgtgtgtgttggaatgccattcattg |
40432456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 14473274 - 14473354
Alignment:
| Q |
56 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaaatgtgcaga |
136 |
Q |
| |
|
||||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14473274 |
ttgaagagtcttgccattattaacaagacaatccttattattgaggcgtttgaaaattgttgggttgataaaatgtgcaga |
14473354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 40912682 - 40912753
Alignment:
| Q |
56 |
ttgaagaatcttgccattattaacaagacattcatttttattgaggcgtttgaaaattgttggcttgataaa |
127 |
Q |
| |
|
||||||| | ||||||||||| ||| || | ||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
40912682 |
ttgaagagtattgccattattcacatgaaaatcattattattgaggtgtttgaaaattgttgggttgataaa |
40912753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University