View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_4 (Length: 649)
Name: NF11729_low_4
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 101 - 638
Target Start/End: Complemental strand, 7497816 - 7497294
Alignment:
| Q |
101 |
gttgagatttttggttgaaaagctgtttaatatagtaga--taataaggagtggtcccttatcttaaggattttagtcctccannnnnnngttgtcttac |
198 |
Q |
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| T |
7497816 |
gttgagatttttggttgaaaagctgtttaatatagtagagataataagaagtggtcccttattataaggattttagtcctccatttttt-gttgtcttac |
7497718 |
T |
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| Q |
199 |
atgaagtggtaaagactatatgaannnnnnnnnnnnnnnnnnnnnnattgcacaactgtaaggtccttaattcgaattcaggtgaaggtgtctagcctca |
298 |
Q |
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| T |
7497717 |
atgaagtggtaaagactatatgaaacacacacaactcacacacacaattgcacaactgtaaggtccttaattcgaactcaggtgaaggtgtctagcctca |
7497618 |
T |
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| Q |
299 |
aaatagtgatcttagactttaaggactagtcctcataaggtcctgaattcgaactcatgtgaacatgagtaggtgtctagcctaagaatagtgatcttag |
398 |
Q |
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| T |
7497617 |
aaatagtgatcttagactttaaggactggtccttataagatcctgaattcgaactcatgtgaacatgagtaggtgtctagcctaagaatagtgatctcag |
7497518 |
T |
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| Q |
399 |
gcttttaaggactagtccttaataatatctcactacactatatatgctgaaatatttaacaagtgaagaaataacaaagtattatactaaacttccttag |
498 |
Q |
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| T |
7497517 |
gc-tttaaggactagtccttaataatatctcactacactatatatgct--------------ctgaa-aaataacaaagtattatactaaacttccttag |
7497434 |
T |
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| Q |
499 |
ttaaaataattttataaattccaatgatacctgtatgaacataaaagaccatagctgcatgtagaagcacaggaagaaacacagagttaggttccaatgt |
598 |
Q |
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| T |
7497433 |
ttaaaataattttataaattccaatgatacctgtatgaacataaaagagcatagctgcatgtagaagcacaggaagaaacacagagttaggttccaatgt |
7497334 |
T |
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| Q |
599 |
aaagaactctatatgatagtgttgtgcgtgatgtccatct |
638 |
Q |
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| T |
7497333 |
aaagaactcaatatgatagtgttgtgtgttatgtccatct |
7497294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 7497902 - 7497851
Alignment:
| Q |
18 |
aaatggttgtacaaacatcattactttttaatttttataaaaacaatgtata |
69 |
Q |
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| T |
7497902 |
aaattgttgtacaaatatcattactttttaatttttataaaaacaatgtata |
7497851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 8317987 - 8317955
Alignment:
| Q |
10 |
acatcatcaaatggttgtacaaacatcattact |
42 |
Q |
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| T |
8317987 |
acatcatcaaatggttgtacaaatatcattact |
8317955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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