View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_41 (Length: 262)
Name: NF11729_low_41
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_41 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 31198946 - 31199207
Alignment:
| Q |
1 |
gaggggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatcca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31198946 |
gaggggctgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatcca |
31199045 |
T |
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| Q |
101 |
tcgccaatcaattgagcaattctcatgcaatacaagtaaaaaacagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaagtacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31199046 |
tcgccaatcaattgagcaattctcatgcaatacaagtaaaaaatagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaactacat |
31199145 |
T |
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| Q |
201 |
tttcatatatgagaaagatccctcccatgataaaaatttactccttttggcgaaactagatt |
262 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31199146 |
tttcatatatgagcaagatccttcccatgataaaaatttactccttttggcgaaactagatt |
31199207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 31159756 - 31160017
Alignment:
| Q |
1 |
gaggggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatcca |
100 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| | | |
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| T |
31159756 |
gaggggatgttaagcttgtatgaagctacacatctcatggttcaaggagaggatattttagaagatgccttggctttcactaccactcacctggactttg |
31159855 |
T |
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| Q |
101 |
tcgccaatcaattgagcaattctcatgcaatacaagtaaaaaacagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaagtacat |
200 |
Q |
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| T |
31159856 |
ttgccaacgaatcgagccatcctcgcgtaacacaagtcaaacactgcttaaggcaagctctccacaagaacttgcctaggctagaggcacgaagctacat |
31159955 |
T |
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| Q |
201 |
tttcatatatgagaaagatccctcccatgataaaaatttactccttttggcgaaactagatt |
262 |
Q |
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| T |
31159956 |
tttcatatacgaggaggatccttcgcatgatgaaaacttacttattttggcgaaactagatt |
31160017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 41318616 - 41318349
Alignment:
| Q |
1 |
gaggggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatcca |
100 |
Q |
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|||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | || | |
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| T |
41318616 |
gaggggattttaagcttttatgaagccacacatgtcatggttcatggagaggacattttggaagaggccttggttttcactaccactcaccttgagtcta |
41318517 |
T |
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| Q |
101 |
tcgccaatcaattgagcaattctcat------gcaatacaagtaaaaaacagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaa |
194 |
Q |
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| T |
41318516 |
ttaccaagcaattgaaccatcctcatcctcaagcattacaagtcaaacattgcttaaggcagaccctccataaaaacttgcctaggttggaggcacgaaa |
41318417 |
T |
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| Q |
195 |
gtacattttcatatatgagaaagatccctcccatgataaaaatttactccttttggcgaaactagatt |
262 |
Q |
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| T |
41318416 |
ctacatttctatatatgagcaagatccttcacataacaaaaatttactcattttggcaaaactagatt |
41318349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 41351969 - 41351708
Alignment:
| Q |
1 |
gaggggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatcca |
100 |
Q |
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||||| ||||||||| | |||||||||||||| | | ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| | |||| |
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| T |
41351969 |
gagggaatgttaagcctatatgaagccacacatgttagagttcatggagatgacattttagaagaggctttagctttcactaccactcaccttgagtcca |
41351870 |
T |
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| Q |
101 |
tcgccaatcaattgagcaattctcatgcaatacaagtaaaaaacagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaagtacat |
200 |
Q |
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| ||||| || ||| |||| ||||||||||||| | | | || |||||||| ||||| ||||||| |||||| |||| || || || || || |
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| T |
41351869 |
ttgccaaccagacaagccattcaaatgcaatacaagtcagacatagtttaagacaggctcttcataagaatttgcctaggcttgaagcacacaactatat |
41351770 |
T |
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| Q |
201 |
tttcatatatgagaaagatccctcccatgataaaaatttactccttttggcgaaactagatt |
262 |
Q |
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|| |||||| ||| ||||||| |||||| || ||| ||||||||||||||| ||| |||||| |
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| T |
41351769 |
ttacatatacgagcaagatccttcccataatgaaattttactccttttggcaaaattagatt |
41351708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 25832571 - 25832673
Alignment:
| Q |
4 |
gggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatccatcg |
103 |
Q |
| |
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|||||||||||||||||||| ||| |||| | || ||||||||||||| |||||||||||||| ||||| || || ||||||||||| | ||||| | |
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| T |
25832571 |
gggatgttaagcttgtatgaggcctcacatatgattattcatggagaggaaattttggaagaggcattggcatttacatccactcaccttgagtccattg |
25832670 |
T |
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| Q |
104 |
cca |
106 |
Q |
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||| |
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| T |
25832671 |
cca |
25832673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 25792474 - 25792721
Alignment:
| Q |
1 |
gaggggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcaccttcaatcca |
100 |
Q |
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|||| ||||||| ||||||||||||||||||| ||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
25792474 |
gaggagatgttatgcttgtatgaagccacacatgtcatgattcacggagagggtattttggaagaggccttggctttcactaccactcaccttgagtcca |
25792573 |
T |
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| Q |
101 |
tcgccaatcaattgagcaattctcatgcaatacaagtaaaaaacagcttaagacaagctctctataagaacttgcctcggctcgaggccagaaagtacat |
200 |
Q |
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| T |
25792574 |
ttgccaagcaattgagtcatccgcgtgcagtacaagtcaaacatagcttaaggcaagctctccacaagaatttgcctaggttagaggcacgacgctacat |
25792673 |
T |
|
| Q |
201 |
tttcatatatgagaaagatccctcccatgataaaaatttactcctttt |
248 |
Q |
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|| |||||| ||| |||||| || | |||| ||||||||||| |||| |
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| T |
25792674 |
ttccatatacgagctagatccttcgcgtgatgaaaatttactcatttt |
25792721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2326625 - 2326716
Alignment:
| Q |
1 |
gaggggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcacct |
92 |
Q |
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||||||||||||||||||||||||||| |||| | ||||||||||||||||| || |||||| |||| |||||||| ||| | |||||||| |
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| T |
2326625 |
gaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagatcttggaaaaggcattggcttttacttcaactcacct |
2326716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 14267008 - 14266920
Alignment:
| Q |
4 |
gggatgttaagcttgtatgaagccacacaactcatggttcatggagaggacattttggaagaggctttggctttcactaccactcacct |
92 |
Q |
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|||||| |||||||||||||||| |||| | || ||||||| ||| ||||||||||||||||| |||| || ||| |||||||||| |
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| T |
14267008 |
gggatgctaagcttgtatgaagcttcacatatgatcgttcatgaagaagacattttggaagaggcattggggtttacttccactcacct |
14266920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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