View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_42 (Length: 262)
Name: NF11729_low_42
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 46451803 - 46452038
Alignment:
| Q |
12 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
111 |
Q |
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| T |
46451803 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46451902 |
T |
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| Q |
112 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451903 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46452002 |
T |
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| Q |
212 |
tgggtttgattgctttggcttttacagagtatgtta |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
46452003 |
tgggtttgattgctttggcttttacagagtatgtta |
46452038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 46344753 - 46344518
Alignment:
| Q |
12 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
111 |
Q |
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| T |
46344753 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46344654 |
T |
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| Q |
112 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
211 |
Q |
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| T |
46344653 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46344554 |
T |
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| Q |
212 |
tgggtttgattgctttggcttttacagagtatgtta |
247 |
Q |
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| T |
46344553 |
tgggtttgattgctttggcctttacagagtatgtta |
46344518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 46462771 - 46463006
Alignment:
| Q |
12 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
111 |
Q |
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| T |
46462771 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46462870 |
T |
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| Q |
112 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462871 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46462970 |
T |
|
| Q |
212 |
tgggtttgattgctttggcttttacagagtatgtta |
247 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
46462971 |
tgggtttgattgctttggcctttacagagtatgtta |
46463006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 46466194 - 46466428
Alignment:
| Q |
13 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
112 |
Q |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46466194 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46466293 |
T |
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| Q |
113 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
212 |
Q |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46466294 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46466393 |
T |
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| Q |
213 |
gggtttgattgctttggcttttacagagtatgtta |
247 |
Q |
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||||||||||||| ||||| ||||||| ||||||| |
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| T |
46466394 |
gggtttgattgctctggctgttacagaatatgtta |
46466428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 46471399 - 46471633
Alignment:
| Q |
13 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
112 |
Q |
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|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
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| T |
46471399 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46471498 |
T |
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| Q |
113 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
212 |
Q |
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|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
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| T |
46471499 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46471598 |
T |
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| Q |
213 |
gggtttgattgctttggcttttacagagtatgtta |
247 |
Q |
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||||||||||||| ||||| ||||||| ||||||| |
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| T |
46471599 |
gggtttgattgctctggctgttacagaatatgtta |
46471633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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