View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_46 (Length: 252)
Name: NF11729_low_46
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 32518902 - 32519146
Alignment:
| Q |
1 |
caacatagccgtataaataactgaacaaagtcttaaaatccgagggaatgattggtataataatataatgcattaatttgaacttatgnnnnnnn-ttgc |
99 |
Q |
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| T |
32518902 |
caacatagccgtataaataacttaacaaagtcttaaaatccgaaggaatgattggtataataatataatgcattaatttgaacttatgaaaaaaaattgc |
32519001 |
T |
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| Q |
100 |
aaaatggtttgatgcacgggcgaaagagccaatatgttccgcccaagtattatatttctcaacaacaaagcctttccaacaaaacctttaaacctaaatc |
199 |
Q |
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| T |
32519002 |
aaaatggtttgatgcacgggcgaaagagccaatatgttccgcccaagtattatatttctcaacaacaaagcctttccaacaaaacctttaaacctaaatc |
32519101 |
T |
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| Q |
200 |
cttcttaatagtttagcttatagtttttattggccttcctatgct |
244 |
Q |
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| T |
32519102 |
cttcttaatagtttagcttatagtttttattggccttcctttgct |
32519146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 32529865 - 32530042
Alignment:
| Q |
4 |
catagccgtataaataactgaacaaagtcttaaaatccgagggaatgattggtataataatataatgcattaatttgaacttatgnnnnnnnttgcaaaa |
103 |
Q |
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||||||||||| || |||| ||||||| ||||||||| || |||||||||||| ||||| | ||||||||||| ||||||||| |||||||| |
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| T |
32529865 |
catagccgtattaacaacttaacaaagccttaaaatctgaaggaatgattggtttaatatttcaatgcattaatctgaacttattaaaaaaattgcaaaa |
32529964 |
T |
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| Q |
104 |
tggtttgatgcacgggcgaaagagccaatatgttccgcccaagtattatatttctcaacaacaaagcctttccaacaa |
181 |
Q |
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| T |
32529965 |
tggtttgacgcaagggtagaagagccaatatgtgccgcacaagtattatatttcacaacaacaaagcctttcccacaa |
32530042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 32544610 - 32544654
Alignment:
| Q |
186 |
tttaaacctaaatccttcttaatagtttagcttatagtttttatt |
230 |
Q |
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|||||| ||||||| ||||||| |||| ||||||||||||||||| |
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| T |
32544610 |
tttaaatctaaatctttcttaacagttcagcttatagtttttatt |
32544654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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