View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_47 (Length: 252)
Name: NF11729_low_47
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26388336 - 26388575
Alignment:
| Q |
1 |
catgttgcatttggttgtctccttttattgactagatggnnnnnnnnatgtgctattcatcttgagcacaatctgagtattgatgcttcactttatagtc |
100 |
Q |
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| T |
26388336 |
catgttgcatttggttgtctccttttattgactagatggttttttttatgtgctattcatcttgagcacaatctgagtattgatgcttcactttatagtc |
26388435 |
T |
|
| Q |
101 |
atcaaccatgatcttttgctcannnnnnnnatatgaattgttgagtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttg |
200 |
Q |
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| T |
26388436 |
atcaaccatgatcttttgctcattttttttatatgaattgttgagtcctctgatgtgctaagtatcctgtagcacaacttgagtattgttcatcactttg |
26388535 |
T |
|
| Q |
201 |
tagccgtcaagaccttccaacattcatttttcttctcctt |
240 |
Q |
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| T |
26388536 |
tagccgtcaagatcttccaacattcatttttcttctcctt |
26388575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 1774001 - 1773937
Alignment:
| Q |
168 |
tttagcacaacttgagtattgt-gcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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| T |
1774001 |
tttagcacaacttgagtattgttgcttcattttgtagtcgtcaagaccttctaacattcattttt |
1773937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 1774078 - 1774021
Alignment:
| Q |
63 |
tgagcacaatctgagtattgatgcttcactttatagtcatcaaccatgatcttttgct |
120 |
Q |
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| T |
1774078 |
tgagcacaatctgagtattgatgcttcactcaatagccatcaaccatgctcctttgct |
1774021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 19473318 - 19473232
Alignment:
| Q |
145 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
19473318 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19473232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 19544243 - 19544157
Alignment:
| Q |
145 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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| T |
19544243 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19544157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 19588453 - 19588539
Alignment:
| Q |
145 |
gtcctctgatgtgctaagtatcctttagcacaacttgagtattgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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|||||| |||||||||| || | ||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
19588453 |
gtcctcagatgtgctaactaccttttagcacagcttgagtattgtgcatcactttgtagtcatcaagaccttttaacattcattttt |
19588539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 19473371 - 19473325
Alignment:
| Q |
185 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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| T |
19473371 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19473325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 19544296 - 19544250
Alignment:
| Q |
185 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19544296 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19544250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 19588400 - 19588446
Alignment:
| Q |
185 |
attgtgcatcactttgtagccgtcaagaccttccaacattcattttt |
231 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
19588400 |
attgtgcatcactttgtagccatcaagaccttttaacattcattttt |
19588446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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