View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_54 (Length: 241)
Name: NF11729_low_54
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 31199300 - 31199519
Alignment:
| Q |
4 |
tttagagtagtccttgtgattaatatgattgttttggttttcacagatggtggaaggtgttgaatgtccgtaataaactaccgtatgcacgagataggct |
103 |
Q |
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| T |
31199300 |
tttagagtagtccttgtgattaatatcattgttttggttttcacagatggtggaaggagttgagtgtccgtaataaactaccgtatgcacgagataggct |
31199399 |
T |
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| Q |
104 |
gacagaaagttgtttttgggctttggcagtttattttgagccccaatattctacaacaagaataataatgatgaagctaatcatcacaatgacggtcatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31199400 |
gacagaaagttgtttttgggctttggcagtttatattgagccccaatattctacaacaagaataataatgatgaagcaaatcatcacaatgacggtcatt |
31199499 |
T |
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| Q |
204 |
gatgatacatatgatgcata |
223 |
Q |
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|||||||||||||||||||| |
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| T |
31199500 |
gatgatacatatgatgcata |
31199519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 41351588 - 41351479
Alignment:
| Q |
48 |
agatggtggaaggtgttgaatgtccgtaataaactaccgtatgcacgagataggctgacagaaagttgtttttgggctttggcagtttattttgagcccc |
147 |
Q |
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||||||||||||| |||| || | | | ||||||||| | |||||| |||||| | | ||||||||||||||||| |||| | |||||||| |||| |
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| T |
41351588 |
agatggtggaaggagttggatctgcatggtaaactaccatttgcacgtgataggattgctgaaagttgtttttgggcattggggatatattttgaacccc |
41351489 |
T |
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| Q |
148 |
aatattctac |
157 |
Q |
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| T |
41351488 |
aatattctac |
41351479 |
T |
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