View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11729_low_55 (Length: 239)
Name: NF11729_low_55
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_55 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 30034106 - 30033943
Alignment:
| Q |
58 |
aaatcaatatatcaaagaataatacaatacaactcgtgtatagtaaaaattacaactaaaccattatcatcttcacagaccttccaccatttccatgtca |
157 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30034106 |
aaatcaatatatcaaagaataatacaa-----cccgtgtacagtaaaaatcacaactaaaccattatcatcttcacagaccttccaccatttccatctca |
30034012 |
T |
|
| Q |
158 |
aacattcttttaattactcaataagataagacgatggactctaaatgcattgtgtttgatgtatgaaat |
226 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30034011 |
aacattcttttaattactcaatgagataagacgatggactctaaatgcattgtgtttgatgtatgaaat |
30033943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30034540 - 30034473
Alignment:
| Q |
1 |
ttcaacgaatgcacgtgcaaaa-cttatctccctcttccacgtgctggt-ttttattaaaaatcaata |
66 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
30034540 |
ttcaacgaatgcacgtgcaaaaacttatctccctctcccacatgctggttttttattaaaaatcaata |
30034473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 23147129 - 23147294
Alignment:
| Q |
56 |
aaaaatcaatatatcaaagaataatacaatacaactcgtgtatagtaaaaattacaactaaaccattatcatcttcacagaccttccaccatttccatgt |
155 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||| | ||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23147129 |
aaaaattaatatatcaaagaataatacaaccca-----tgtacaataaaaatcacatctaaagcattttcatcttcacagaccttccaccatttccatgt |
23147223 |
T |
|
| Q |
156 |
caaacattcttttaattactcaataagataagacgatggactctaaatgcattgtgtttgatgtatgaaat |
226 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23147224 |
caaacattcttttaattactcaatgacataagaagattgactctaaatgcattgtgtttgatgtatgaaat |
23147294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University