View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_56 (Length: 239)
Name: NF11729_low_56
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32518881 - 32518761
Alignment:
| Q |
1 |
aatgcatatcttttaaatcttatgtgacaaactcatggttttttaagacatatt--gagtcttttactgtactttatcatcctgctatattatgcttaca |
98 |
Q |
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| T |
32518881 |
aatgcatatcttttaaatcttatgtgacaaactcatggttttttaagacatattttgagtcttatattgtactttatcatcctgctatattatgcttaca |
32518782 |
T |
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| Q |
99 |
aatattttcatttgaatgttg |
119 |
Q |
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| T |
32518781 |
aatattttcatttgaatgttg |
32518761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 32529816 - 32529618
Alignment:
| Q |
23 |
tgtgacaaactcatggttttttaagacatattgagtcttttactgtact-ttatcatcctgctatattatgcttacaaatattttcatttgaatgttgta |
121 |
Q |
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| T |
32529816 |
tgtgataaactcatgactttttaagacattctgagtcttgtattgtattcttagcatcctgctattttatgcttacaaatgttttcttttgcatgttata |
32529717 |
T |
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| Q |
122 |
tccaagtcctgaaggtattttccatgatttacctatgaaatgttttgatgttttattcctttcctcagaattcggttcattatgttgctcttggagcaa |
220 |
Q |
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| T |
32529716 |
ttcaagctctcaaggtactttccataatttacatatgtaatgttttgatattttatttctttcctcagaaatctgttgattatgctgttcttggagcaa |
32529618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 32544172 - 32544112
Alignment:
| Q |
160 |
aatgttttgatgttttattcctttcctcagaattcggttcattatgttgctcttggagcaa |
220 |
Q |
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||||||||||| |||||||| ||||| |||||||| ||| |||||| || ||||||||||| |
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| T |
32544172 |
aatgttttgatattttattcgtttccccagaattctgttgattatgctgttcttggagcaa |
32544112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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