View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_7 (Length: 585)
Name: NF11729_low_7
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_7 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 13763 - 14078
Alignment:
| Q |
1 |
aacatgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtga |
100 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13763 |
aacatgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtga |
13862 |
T |
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| Q |
101 |
aattagagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13863 |
aattagagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttcc |
13962 |
T |
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| Q |
201 |
ccagatacaacctcgtgacccttttaatcatgtctagtcctcgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgag |
300 |
Q |
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| T |
13963 |
ccagatacaacttcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgag |
14062 |
T |
|
| Q |
301 |
tacaacttccatccag |
316 |
Q |
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|||||||||||||||| |
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| T |
14063 |
tacaacttccatccag |
14078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 382 - 568
Target Start/End: Original strand, 14144 - 14330
Alignment:
| Q |
382 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctatacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
481 |
Q |
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| T |
14144 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctaaacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
14243 |
T |
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| Q |
482 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcgtccaccagactagtattcgccaatgtttct |
568 |
Q |
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| T |
14244 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcatccaccaaactagtattcgtcaatgtttct |
14330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 42933008 - 42932693
Alignment:
| Q |
1 |
aacatgtgaggatgaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtga |
100 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933008 |
aacatgtgaagatgaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtga |
42932909 |
T |
|
| Q |
101 |
aattagagttaacctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932908 |
aattagagttaacctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttcc |
42932809 |
T |
|
| Q |
201 |
ccagatacaacctcgtgacccttttaatcatgtctagtcctcgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgag |
300 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932808 |
ccagatacaacttcgtgacccttttaatcatgtctagtccttgggtactgcaacaaaggtgaatttgtgacacatgctttctgattttcattgtactgag |
42932709 |
T |
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| Q |
301 |
tacaacttccatccag |
316 |
Q |
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|||||||||||||||| |
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| T |
42932708 |
tacaacttccatccag |
42932693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 382 - 568
Target Start/End: Complemental strand, 42932627 - 42932441
Alignment:
| Q |
382 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctatacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932627 |
acattgtaagaccaggtcactcttcaaactcatggttgtctaaaatgctaaacattaaaacctgttgtagacaatgatataaatcaagtaaaagatattc |
42932528 |
T |
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| Q |
482 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcgtccaccagactagtattcgccaatgtttct |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
42932527 |
ctattttaccttggactaaataggttgttgcgaatatcgattggggaataaagagcatccaccaaactagtattcgtcaatgtttct |
42932441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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