View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_low_9 (Length: 547)
Name: NF11729_low_9
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 43078632 - 43079148
Alignment:
| Q |
18 |
cgttataatttgatgttgtattttttgttctcattctattctattctattgggtccaccaccattatcaggactgtattctatggacaatacaaatgcac |
117 |
Q |
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| T |
43078632 |
cgttataatttgatgttgtattttttgttctcattc-----tattctattgggtccaccaccattatcaggactgtattctatggacaatacaaatgcac |
43078726 |
T |
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| Q |
118 |
aggaccaggagcaagctatgcagggagggtagcatggtcaagggaactcactgatgaggaggctaaaccatttatttcactcaattatgttgatggatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43078727 |
aggaccaggagcaagctatgcagggagggtagcatggtcaagggaactcactgatgaggaggctaaaccatttatttcactcaattatgttgatgggtct |
43078826 |
T |
|
| Q |
218 |
gagtggattaattctttcttttgaattaagaggaaatgagaatgattttctcatgtgaccaattttttatg------tatatattaaatgaataagctcc |
311 |
Q |
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| T |
43078827 |
gagtggattaattctttcttttgaattgagaggaaatgagattgattttctcatgtgaccaattttttatgtatatatatatattaaatgaataagctcc |
43078926 |
T |
|
| Q |
312 |
atcaatgacaaaatgtagaagagaacctgagttcaattcttgatgagactttacctaccccagactgaactccggattctcatgactcattgcattcata |
411 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43078927 |
atcaatgacaaattgtagaagagaacctgacttcaattcttgatgagactttacctatcccatactgaactccggattctcatgactcattgcattcata |
43079026 |
T |
|
| Q |
412 |
aatttagtagtaaaactaaaatgcacataatagcattttctcaacaacttgtgtcttggcgnnnnnnnnaatggaaaaagatatttgtccttaattttaa |
511 |
Q |
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| T |
43079027 |
aatatagtagtaaaactaaaatgcacataatagcattttctcaacaacttgtgtattggcgttttttttaatggaaaaagatatttgtccttaattttaa |
43079126 |
T |
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| Q |
512 |
ctgtacatgttgggtctctctg |
533 |
Q |
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| T |
43079127 |
ctgtacatgttgggtctctctg |
43079148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 33962541 - 33962419
Alignment:
| Q |
76 |
caccattatcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgcagggagggtagcatggtcaagggaactcactgatgag |
175 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||| ||| |||||||||| |||||||||||||| |
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| T |
33962541 |
caccactatcaggactgtattctatggacaatacaaatgcacaggacctggagcaagttttgcagggagagtatcatggtcaagagaactcactgatgaa |
33962442 |
T |
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| Q |
176 |
gaggctaaaccatttatttcact |
198 |
Q |
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|| |||| ||| ||| ||||||| |
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| T |
33962441 |
gaagctagaccttttctttcact |
33962419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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