View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_107 (Length: 268)
Name: NF1172_high_107
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_107 |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6381564 - 6381797
Alignment:
| Q |
1 |
ttgactttcctatggtgataaagttttatcctttcccatgtaaaatgccaccttatttgtttgtcttgaatattaattcttagctatgaagttactacgg |
100 |
Q |
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| T |
6381564 |
ttgactttcctatggtggaaaagttttatcctttcccatgtgaaatgccaccttatttgtttgtcttgaatattaattcttagctatgaagttactacgg |
6381663 |
T |
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| Q |
101 |
taatgaatgaatgagagagcttatgattatatgaatccaaattcaacttatgtatgtaaaagacaaaaagtcataaaagtgttgtgttagcatccatttg |
200 |
Q |
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| T |
6381664 |
tagtgaa----tgagagagcttatgattatatgaatccaaattcaacttatgtatgtaaaagacaaaaagtcataaaagtgttgtgttagcatccatttg |
6381759 |
T |
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| Q |
201 |
cttccatgttccatactttattcaatgcatagtataat |
238 |
Q |
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| T |
6381760 |
cttccatgttccatactttattcaatgcgtagtataat |
6381797 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46187884 - 46187936
Alignment:
| Q |
1 |
ttgactttcctatggtgataaagttttatcctttcccatgtaaaatgccacct |
53 |
Q |
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| T |
46187884 |
ttgactctcccatggtgagaaagttttatcctttcccatgtgaaatgccacct |
46187936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 15122 - 15071
Alignment:
| Q |
8 |
tcctatggtgataaagttttatcctttcccatgtaaaatgccaccttatttg |
59 |
Q |
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| T |
15122 |
tcctatggtgggaaagttttaccctttcccatgttaaatgccacctgatttg |
15071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 52597749 - 52597798
Alignment:
| Q |
4 |
actttcctatggtgataaagttttatcctttcccatgtaaaatgccacct |
53 |
Q |
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| T |
52597749 |
actttcctatggtgaaaaaggattaacctttcccatgtgaaatgccacct |
52597798 |
T |
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