View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_11 (Length: 592)
Name: NF1172_high_11
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 29 - 584
Target Start/End: Original strand, 46920759 - 46921314
Alignment:
| Q |
29 |
acatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgctcttttgcagatacccatgactggtaaacagattca |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46920759 |
acatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgctcttatgcagatacccatgactggtaaacagattca |
46920858 |
T |
|
| Q |
129 |
cggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaac |
228 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46920859 |
cggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcacggtgatgcttgtaac |
46920958 |
T |
|
| Q |
229 |
atgtttgatgaaatgcctcatagaaacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcaattgcggcgttta |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46920959 |
atgtttgatgaaatgcctcatagaaacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgtgattgcggcgttta |
46921058 |
T |
|
| Q |
329 |
aggagttcctttgtgtgcatggagagccgaattcgattacattttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagtt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921059 |
aggagttcctttgtgtgcatggagagccgaattcgattacattttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagtt |
46921158 |
T |
|
| Q |
429 |
acatgcttttattgttcggtgtggatataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaa |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921159 |
acatgcttttattgttcggtgtggatataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaa |
46921258 |
T |
|
| Q |
529 |
atggtttttagtagaattggtaataggaagaatgttgtttcatggtgccctatgct |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46921259 |
atggtttttagtagaattggtaataggaagaatgttgtttcatggtgctctatgct |
46921314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 58 - 362
Target Start/End: Complemental strand, 46891937 - 46891634
Alignment:
| Q |
58 |
gacttcacttttccgtgtgttttcaaagcttctgctcttttgcagatacccatgactggtaaacagattcacggtcttgctttaaagggtgggatgatat |
157 |
Q |
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||||| ||||||| ||||||||||||||||||| | |||| | || |||||| |||| |||| |||| ||| | || ||||||| ||| |||| |
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| T |
46891937 |
gacttaacttttcaatgtgttttcaaagcttctgattctttgaacatgtccatgagtggttaacaagttcatggtttagcattaaaggatggtcaaatat |
46891838 |
T |
|
| Q |
158 |
atgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaacatgtttgatgaaatgcctcatagaaactt |
257 |
Q |
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||||||| |||||||||||| || ||||||||||| ||| ||||||||| || | | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46891837 |
atgatgtatttgttgggtgtggtgcttttgatatgtgttgcaaaactgggctttg-gttgatgcttgtaacatgtttgatgaaatgcctcatagaaactt |
46891739 |
T |
|
| Q |
258 |
ggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcaattgcggcgtttaaggagttcctttgtgtgcatggagagccg |
357 |
Q |
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||| |||||||||||||||||||| | ||||||||||||| | | || |||||||||||| | |||||||||||| || ||||||||||||||||| |
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| T |
46891738 |
ggccacttggaatgcttatatttccattgcagttcaagattggcgtactatggatgcaattgaagtgtttaaggagtttctatgtgtgcatggagagcca |
46891639 |
T |
|
| Q |
358 |
aattc |
362 |
Q |
| |
|
||||| |
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| T |
46891638 |
aattc |
46891634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 370 - 584
Target Start/End: Complemental strand, 46891584 - 46891371
Alignment:
| Q |
370 |
ttttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagttacatgcttttattgttcggtgtggatataaagaggatgttt |
469 |
Q |
| |
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||||||||| | ||||||| || ||||| || |||||||||||| |||| | | ||||||| | ||||| ||| | |||||||||||||||||||| |
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| T |
46891584 |
ttttgtgcggtcctgaatgcctgtgttgacttgttgagattgaatcacgggtgacggttacattcatttataattcattttggatataaagaggatgttt |
46891485 |
T |
|
| Q |
470 |
ctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctg-aaatggtttttagtagaattggtaataggaagaatgttgttt |
568 |
Q |
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|||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| |||||| ||||| | |||||||| || || ||||||| ||| |
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| T |
46891484 |
ctgttgcgaatgggcttattagtttttgtgggaaatgtggggacattgtatctgctgaaaatgg--tttagcaaaattggtagtaagaggaatgtttttt |
46891387 |
T |
|
| Q |
569 |
catggtgccctatgct |
584 |
Q |
| |
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|||||| ||||||| |
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| T |
46891386 |
tttggtgctctatgct |
46891371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 29 - 584
Target Start/End: Original strand, 38310916 - 38311471
Alignment:
| Q |
29 |
acatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgctcttttgcagatacccatgactggtaaacagattca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38310916 |
acatgcgtcgtgataatgttcaacctaacgacttcacttttccgtgtgttttcaaagcttctgcttttgtgcagatacccatgactggtaaacagattca |
38311015 |
T |
|
| Q |
129 |
cggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaac |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311016 |
cggtcttgctttaaagggtgggatgatatatgatgtgtttgttgggtgtagttgttttgatatgtattgtaaaactgggtttcgcggtgatgcttgtaac |
38311115 |
T |
|
| Q |
229 |
atgtttgatgaaatgcctcatagaaacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcaattgcggcgttta |
328 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
38311116 |
atgtttgatgaaatgcctcaaagaaacttggctacttggaatgcttatatttctaatgcagttcaagatcgaaggtctttggatgcgattgtggcgttta |
38311215 |
T |
|
| Q |
329 |
aggagttcctttgtgtgcatggagagccgaattcgattacattttgtgcgtttttgaatgcttgcgttgatatgatgagattgaatctcgggcgtcagtt |
428 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
38311216 |
aggagtttctttgtgtgcatggagagccgaattcgattacattttgtgcatttttgaatgcttgcgttgatatggtgagattgaatctcgggcgtcagtt |
38311315 |
T |
|
| Q |
429 |
acatgcttttattgttcggtgtggatataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaa |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311316 |
acatgcttttattgttcggtgtggatataaagaggatgtttctgttgcgaatgggcttattgatttctatggaaaatgtggggacattgtatctgctgaa |
38311415 |
T |
|
| Q |
529 |
atggtttttagtagaattggtaataggaagaatgttgtttcatggtgccctatgct |
584 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38311416 |
atggtttttaatagaattggtaataggaagaatgttgtttcatggtgctctatgct |
38311471 |
T |
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