View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_113 (Length: 258)
Name: NF1172_high_113
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_113 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 23360469 - 23360265
Alignment:
| Q |
1 |
tatgacattgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacata |
99 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23360469 |
tatgactttgaagctagccagtggtgtaagaattcaaggtaacaaaaagttcttaaactttcatgttatatttcttgataaataaaatgttgtgcacata |
23360370 |
T |
|
| Q |
100 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcattcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtg |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23360369 |
ggataaattgatgcaagaacactttgagtttgtatatattggatgagagtcactcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtg |
23360270 |
T |
|
| Q |
200 |
tataa |
204 |
Q |
| |
|
||||| |
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|
| T |
23360269 |
tataa |
23360265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 23714208 - 23714008
Alignment:
| Q |
1 |
tatgacattgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacata |
99 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23714208 |
tatgactttgaagctagccagtggtgtaagaattcaaggtaacaaaaagttcttaaactttcatgttatatttcttgataaataaaatgttgtgcacata |
23714109 |
T |
|
| Q |
100 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcattcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23714108 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcactcctatttgtgcaaatgctttgattcttcttttccttcgtgtgcgtg |
23714009 |
T |
|
| Q |
200 |
t |
200 |
Q |
| |
|
| |
|
|
| T |
23714008 |
t |
23714008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 23732664 - 23732464
Alignment:
| Q |
1 |
tatgacattgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacata |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23732664 |
tatgactttgaagctagccagtggtgtaagaattcaaggtaacaaaaagttcttaaactttcatgttatatttcttgataaataaaatgttgtgcacata |
23732565 |
T |
|
| Q |
100 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcattcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23732564 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcactcctatttgtgcaaatgctttgattcttcttttccttcgtgtgcgtg |
23732465 |
T |
|
| Q |
200 |
t |
200 |
Q |
| |
|
| |
|
|
| T |
23732464 |
t |
23732464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 23751119 - 23750919
Alignment:
| Q |
1 |
tatgacattgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacata |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23751119 |
tatgactttgaagctagccagtggtgtaagaattcaaggtaacaaaaagttcttaaactttcatgttatatttcttgataaataaaatgttgtgcacata |
23751020 |
T |
|
| Q |
100 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcattcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtg |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23751019 |
ggataaattgatgcaagaacactttgagattgtatataatggatgagagtcactcctatttgtgcaaatgctttgattcttcttttccttcgtgtgcgtg |
23750920 |
T |
|
| Q |
200 |
t |
200 |
Q |
| |
|
| |
|
|
| T |
23750919 |
t |
23750919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 23365283 - 23365090
Alignment:
| Q |
8 |
ttgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacataggataaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
23365283 |
ttgaagctagccagtggtgtaagaattcaaggtaacaaaaagttcttaaactttcatgttatatttcttgataaataaaatgttgtgcacataggataaa |
23365184 |
T |
|
| Q |
107 |
ttgatgcaagaacactttgagattgtatataatggatgagagtcattcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtgt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23365183 |
ttgatgcaagaacactttgagattgtatataatggatgagagtcactcctatttgtgcaaatgctttgattcttcttttccttcgtgtgcgtgt |
23365090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 23695761 - 23695568
Alignment:
| Q |
8 |
ttgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacataggataaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23695761 |
ttgaagctagccagtggtgtaagaattcaaggtaacaaaaagttcttaaactttcatgttatatttcttgataaataaaatgttgtgcacataggataaa |
23695662 |
T |
|
| Q |
107 |
ttgatgcaagaacactttgagattgtatataatggatgagagtcattcctatttgtgcaaatgcttagattcttcttttccttcgtgtgcgtgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
23695661 |
ttgatgcaagaacactttgagattgtatataatggatgagagtcactcctatttgtgcaaatgctttgattcttcttttccttcgtgtgcgtgt |
23695568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 24101149 - 24101293
Alignment:
| Q |
8 |
ttgaagctagccagtggtgtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgc--acataggata |
104 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| |||| ||||||||| || ||||||| |||| |||||||||||||||||||| | ||| |||| |
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|
| T |
24101149 |
ttgaagctagccagtggagtgagaattcaaggtaataaaaagttcttaaaattacatgttagatttcttgataaataaaatgttgtgcatatatatgata |
24101248 |
T |
|
| Q |
105 |
aattgatgcaagaacactttgagattgtatataatggatgagagtca |
151 |
Q |
| |
|
||||||||||||| |||||||| ||| || || ||||||||||||| |
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|
| T |
24101249 |
aattgatgcaaga--actttgagcttgcatttactggatgagagtca |
24101293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 24105321 - 24105456
Alignment:
| Q |
26 |
gtaagaattcaaggtaacaaaa-gttcttaaactttcatgttatatttaatgataaataaaatgttgtgcacataggataaattgatgcaag-aacactt |
123 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||||||||||| |||| ||||| ||||||||||||||| | |||| |||||||| ||| |||| || |
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| T |
24105321 |
gtaagaattcaaggtaataaaaagtttctaaactttcatgttacatttctcgataa-taaaatgttgtgcacgttggatgaattgatgaaagaaacagtt |
24105419 |
T |
|
| Q |
124 |
tgagattgtatataatggatgagagtcattcctatttg |
161 |
Q |
| |
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| ||||| |||| ||||||||||||||||||| |||| |
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|
| T |
24105420 |
t-agatttcatatgatggatgagagtcattcctgtttg |
24105456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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