View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_116 (Length: 252)
Name: NF1172_high_116
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_116 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 1978372 - 1978131
Alignment:
| Q |
11 |
caaagggggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaa |
110 |
Q |
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| T |
1978372 |
caaagagggaagttttgtcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaa |
1978273 |
T |
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| Q |
111 |
tcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgtta |
210 |
Q |
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| T |
1978272 |
tcaaattccattaatggttttgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgttt |
1978173 |
T |
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| Q |
211 |
aaacaaacttcacctttcaagatgattgaaaagtttccaagc |
252 |
Q |
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| T |
1978172 |
aaacaaacttcacctttcaagatgattgaaaagtttccaagc |
1978131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 31 - 252
Target Start/End: Original strand, 1948054 - 1948275
Alignment:
| Q |
31 |
agcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatggttt |
130 |
Q |
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| T |
1948054 |
agcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcgatgttgagagacattgttatgctcgagaatcaaattccgttatttgttt |
1948153 |
T |
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| Q |
131 |
tgagaaaattgcttgagttcaaactctcatcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgttaaaacaaacttcacctttcaa |
230 |
Q |
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| T |
1948154 |
tgagaaaattgcttgagttcaaattctcgtcaaaagaagctgctgatgaaatgttgattttcatgtttataggtttgtttaaacaaacttcacctttcaa |
1948253 |
T |
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| Q |
231 |
gatgattgaaaagtttccaagc |
252 |
Q |
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| T |
1948254 |
gatgattgaagagtttccaagc |
1948275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 1985226 - 1985058
Alignment:
| Q |
75 |
taatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatggttttgagaaaattgcttgagttcaaactc---tcatcaaaagaagct |
171 |
Q |
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| T |
1985226 |
taatgcaattttgagggatattgtgatgcttgagaatcaaattccattatttgttttgagaaagatgcttgagttaaaattcttttcatcagaagaaaat |
1985127 |
T |
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| Q |
172 |
gctgatgaaatgttgattttcatgtttataggtttgttaaaacaaacttcacctttcaagatgattgaa |
240 |
Q |
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| T |
1985126 |
gctgatgatgtgttgatattgatgtgtataaggttgtttaaagagatttcaccctttaagatgtttgaa |
1985058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 5625098 - 5625207
Alignment:
| Q |
28 |
tcaagcatgtcacatttagttgactatgctggtagaaaatcagctcataatgcaatgttgaaagacattgttatgcttgagaatcaaattccattaatgg |
127 |
Q |
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| T |
5625098 |
tcaaggatgtcacatttgtttgattatggagggaggaaattaggtcataatgcaatcttgaaagacatagtaatgcttgaaaatcaaatccctttattta |
5625197 |
T |
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| Q |
128 |
ttttgagaaa |
137 |
Q |
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| T |
5625198 |
ttttgagaaa |
5625207 |
T |
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