View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_122 (Length: 251)
Name: NF1172_high_122
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_122 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 24134 - 24015
Alignment:
| Q |
18 |
aagcaaagttccaaagacttag-tagaagcatatgctcccttgttcctggttgcagcttcagtacctggtttcaaaatgaataattgtatcaatnnnnnn |
116 |
Q |
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| T |
24134 |
aagcaacgttccgaagacttaggtagaagcagctgctcccttgttcctgggtgcagcttcagtacctggtttcaaaatgaatcaatgtatcaacaaacaa |
24035 |
T |
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| Q |
117 |
ncaatccagaaaaaataaca |
136 |
Q |
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||||||||||||||||||| |
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| T |
24034 |
gcaatccagaaaaaataaca |
24015 |
T |
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