View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_13 (Length: 585)
Name: NF1172_high_13
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 179 - 573
Target Start/End: Original strand, 44953468 - 44953859
Alignment:
| Q |
179 |
tgaatgaggagaaggtggtacctctttgacatcctcggcttcaacggtccaggggccataaacaccgttataaacttgctgctggttttctcccaccgct |
278 |
Q |
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| T |
44953468 |
tgaatgaggagaaggtggtacctctttgacatcctcggcttcaacggtccaggggccataaacaccgttataaacttgctgctggttttctcccaccgct |
44953567 |
T |
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| Q |
279 |
ttacaccgtaccgacccaattctgattctcggagaagggacctgacataaacttgaagaaggaattcgaacaagtttagaagtcgaaggccttacagata |
378 |
Q |
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| T |
44953568 |
ttacaccgtaccgacccaattctgattctcggagaagggacctgacataaacttgaagaaggaattcgaacaagattagaagtcgaaggccttacagata |
44953667 |
T |
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| Q |
379 |
ttgtaactgccacagaaacagtactcaatccttgtaacgccatattttcgctgtgtaggtttctactttttaattcaaccataataataataaataacct |
478 |
Q |
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| T |
44953668 |
ttgtaactgccacagaaacagtactcaatccttgtaacgccatattttcgctgtggaggtttctactttttaattcaacc---ataataataaataacct |
44953764 |
T |
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| Q |
479 |
catcannnnnnnattcttgtggtcattaatcactcaatcaaatcacttcaaattttcaactttttaagtactctcacctttcctttttaaatatt |
573 |
Q |
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| T |
44953765 |
catcatttttttattcttgtggtcattaatcactcaatcaaatcacttcaaattttcaacttttttaatactctcacgtttcctttttaaatatt |
44953859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 44953371 - 44953427
Alignment:
| Q |
29 |
aataatgactcaagtaacaaatgaatttacaaaacagaatgatattctaataaccta |
85 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
44953371 |
aataatgactcaagtaacaaatgaatttacaaaacagaatgatattgttataaccta |
44953427 |
T |
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