View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_132 (Length: 232)
Name: NF1172_high_132
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_132 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5897126 - 5897310
Alignment:
| Q |
1 |
ataatgaattgatagactcacacttgaaggagagattgttgtatggcaaatgtgagttagaaatataatattgctttaaaaagtgaatannnnnnnggag |
100 |
Q |
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| T |
5897126 |
ataatgaattgatagactcacacttgaaggagagattgttgtgtggcaaatgtgagttagaaatataatattgctttaaaaagtgaatatttttttggag |
5897225 |
T |
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| Q |
101 |
aaatttaaaaagtgaatattaaaaaatatataaattagagaacatataaactaaatgcactaagggtttaaattaacacgtgatg |
185 |
Q |
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| T |
5897226 |
aaatttaaaaagtgaatattaagaaatatataaattagagaacatataaactaaatgcactaagggtttaaattaatatgtgatg |
5897310 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 2512655 - 2512714
Alignment:
| Q |
4 |
atgaattgatagactcacacttgaaggag-agattgttgtatggcaaatgtgagttagaa |
62 |
Q |
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| T |
2512655 |
atgaattgatagacttacacttgatggaggagattgttgtatggcaagtgtgagttagaa |
2512714 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 31509583 - 31509637
Alignment:
| Q |
4 |
atgaattgatagactcacacttgaaggagagattgttgtatggcaaatgtgagtta |
59 |
Q |
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| T |
31509583 |
atgaattgatggactcacacttgagggagagattgttgtgt-gcaagtgtgagtta |
31509637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 2417649 - 2417724
Alignment:
| Q |
7 |
aattgatagactcacacttgaaggagagattgttgtatggcaaatgtgagttagaaatataatattgctttaaaaa |
82 |
Q |
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||||||| |||||| |||||| || |||||||| |||||||||||||||||| || ||| |||||||| ||||| |
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| T |
2417649 |
aattgatggactcaaacttgaggggtagattgttttatggcaaatgtgagttaaaagtatcttattgcttaaaaaa |
2417724 |
T |
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