View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_high_19 (Length: 543)
Name: NF1172_high_19
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 9453698 - 9453528
Alignment:
| Q |
30 |
gtaaatcacttctacctgaaaatcaaaaccatctctttccactataatctcatcaaaaatgtgtttagaaatatctatgtcaatgagaacccttgcatag |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
9453698 |
gtaaatcacttctacctgaaaatcaaaaccatctctttccactataatctcatcaaaaatgtgtttagaaatatctatgtcaatgagaaccttcgcatag |
9453599 |
T |
|
| Q |
130 |
tgcgcaaagtggcggtatttggttgcggactcaatgatcaaaagagttccaatcgctccggctatctcgcg |
200 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
9453598 |
tgcccaaagtggcggtattgagttgcggactcaatgatcaaaggagttccaatcgctctggctatctcgcg |
9453528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 236 - 383
Target Start/End: Complemental strand, 9452581 - 9452434
Alignment:
| Q |
236 |
tatccaaacttgagatgagtttggtaatgcatataagggttaaagtccttcgtccattgaaaaagacggaggatacccgacttcaaattagaggtgccga |
335 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
9452581 |
tatccaaatttaggatgagtttggtaatgcatataaaggttaaagtccttcgtccattgaaaaagacggaggatgcctgacttcaaattagaggtgccta |
9452482 |
T |
|
| Q |
336 |
gagcccaagcattttgcatatcctccaaagtggagaactcaaattcat |
383 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9452481 |
gagcccaagcgttttgcatatcctccaaagtggagaactcaaattcat |
9452434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 410 - 487
Target Start/End: Complemental strand, 9452404 - 9452318
Alignment:
| Q |
410 |
tccctaatgataccaatttccattgtctcgagagtttc---------gagagtttcaaatataaatcattggcagtatacaacttat |
487 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9452404 |
tccctaatgataccaattttcattgtcccgagagtttccatagtttcgagagtttcaaatataaatcattggcagtatacaacttat |
9452318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 13076632 - 13076692
Alignment:
| Q |
323 |
ttagaggtgccgagagcccaagcattttgcatatcctccaaagtggagaactcaaattcat |
383 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| || | ||||||||||||||||| |
|
|
| T |
13076632 |
ttagaggtgcctagagcccaagcattgcgcatatcctctaatgaggagaactcaaattcat |
13076692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 535
Target Start/End: Original strand, 13076814 - 13076858
Alignment:
| Q |
491 |
atgtaggagccgcttacattcaacaattcccttgtcatattcttc |
535 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
13076814 |
atgtaagagccgcttacattcatcaattcccttttcatattcttc |
13076858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 15160194 - 15160154
Alignment:
| Q |
491 |
atgtaggagccgcttacattcaacaattcccttgtcatatt |
531 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15160194 |
atgtaggagccgcttacattcatcaattcccttttcatatt |
15160154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 15160431 - 15160395
Alignment:
| Q |
160 |
tcaatgatcaaaagagttccaatcgctccggctatct |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15160431 |
tcaatgatcaaaggagttccaatcgctccggctatct |
15160395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 487
Target Start/End: Complemental strand, 15160306 - 15160220
Alignment:
| Q |
410 |
tccctaatgataccaatttccattgtctcgagagtttc---------gagagtttcaaatataaatcattggcagtatacaacttat |
487 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
15160306 |
tcccaaatgataccaatttccattgtcccgagtgtttccacagttccgagagtttcaaatataaatcttcggtagtatacaacttat |
15160220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University