View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_23 (Length: 527)
Name: NF1172_high_23
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 498
Target Start/End: Original strand, 43109919 - 43110408
Alignment:
| Q |
9 |
gaataatatactataaggaatacatcaccactcaacaccataattagactttcgttgactacaatgaggtcacttatgttacttattttgaggaattgaa |
108 |
Q |
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| T |
43109919 |
gaataatatactataaggaatacatcaccactcaacaccataattagactttcgttgactacaatgaggtcacttatgttacttattttgaagaattgaa |
43110018 |
T |
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| Q |
109 |
gaggtagttgatctttttaaatggtcaagtaagactttaggtaacatgcatagacgaaagtgatgtttggtccaacaatgttgatgtttttaaacataat |
208 |
Q |
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| T |
43110019 |
gaggtagttgatctttttaaatggtcaagtaagactttaggtaacatgcatagacgaaagtgatgtttggtccaacaatgttgatgtttttaaacataat |
43110118 |
T |
|
| Q |
209 |
agaggaccaactttacatgaaacaaaagaccatttgaaactttagattaagttaaagaaactgtagtgcagttttgcttaaatgataagaatatttgtaa |
308 |
Q |
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| T |
43110119 |
agaggaccaactttacatgaaacaaaagaccatttgaaactttagattaagttaaaggaactgtagtgcagttttgcttaaatgataagaatatttgtaa |
43110218 |
T |
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| Q |
309 |
agaaagactttttagttttacaaaggaggaatcctaacagcatactttttcttctcatgtggtcccattaaataacctagccaactctattggtgggacc |
408 |
Q |
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| T |
43110219 |
agaaagactttttagttttacaaaggaggaatcctaacagcatactttttcttctcatgtggtcccattaaataacctagccaactctattggtgggacc |
43110318 |
T |
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| Q |
409 |
aacataggatttcatttaataatagtgttgaaaagagaatgtcaaaataggagtcataaacatgtccataaacaaacacagaagacattg |
498 |
Q |
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| T |
43110319 |
aacataggatttcatttaataatagtgttgaaaagagaatgtcaaaataggagtcataaacatttccatcaacaaacacaaaagacattg |
43110408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 21480195 - 21480280
Alignment:
| Q |
123 |
ttttaaatggtcaagtaagactttaggtaacatgcatagacg-aaagtgatgtttggtccaacaatgttgatgtttttaaacataa |
207 |
Q |
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| T |
21480195 |
ttttgaatggtcaagtaagacttttggtaatatgcatagatgaaaaatggagtttggtccaacattgttgacagttttaaacataa |
21480280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 41194273 - 41194327
Alignment:
| Q |
91 |
ttattttgaggaattgaagaggtagttgatctttttaaatggtcaagtaagactt |
145 |
Q |
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| T |
41194273 |
ttatcttgatgaattgaagatgtaatttatctttttaaatggttaagtaagactt |
41194327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 33395651 - 33395708
Alignment:
| Q |
151 |
aacatgcatagacgaaag-tgatgtttggtccaacaatgttgatgtttttaaacataa |
207 |
Q |
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| T |
33395651 |
aacatacatagacgaaaaatgaagtttggtccaacattgttgaagtttttaaacataa |
33395708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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