View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1172_high_25 (Length: 512)
Name: NF1172_high_25
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 502
Target Start/End: Original strand, 8244272 - 8244740
Alignment:
| Q |
29 |
ataattaacctttgagaactgctagaaacacattattttcaatactctttctaacactttgtcatttattggatgaaatcaaagttagtaaagtgcgaat |
128 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8244272 |
ataattaacctttgaggagtgctagaaacacactattttcaatactctttccaacact--gtcatttattggatgaaatcaaagttagtaaagtgcgaat |
8244369 |
T |
|
| Q |
129 |
aacgagcatacttccgtttttaaaataatatcttttagtaaagttcaatcaagctgattcnnnnnnnnnnaaagatttctttgattttcttttaccttca |
228 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8244370 |
aatgagcatacttccgtttttaaaataatctcttttagtaaagttctatcaagttgattctttttttt--aaagatttctttgattttcttttaccttca |
8244467 |
T |
|
| Q |
229 |
catggtttcaaagttggattcatttgcatatattcaccccgctcaaaacgtgtcttctttctttggtgttacccttagccagcttcgcttaatttctttt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8244468 |
catggtttcaaagttggattcatttgcatgtattcaccccgctcaaaacgtgtcttctttctttggtgttacccttagccaacttcgcttaatttctttt |
8244567 |
T |
|
| Q |
329 |
taacaattattctctacaatcgttatatggcacaccgttgtaatagtgaggaccgtttgatttagaaatagaaaattaatttcactaaatttaaaggtct |
428 |
Q |
| |
|
||||||||||||||||| | | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8244568 |
aaacaattattctctacagccactgtatggcacaccgttgtaatagtaaggaccgtttaatttagaaatagaaaattaatttcactaaatttaaaggtct |
8244667 |
T |
|
| Q |
429 |
ccactactgccacatcagacagttgttgttggggatcaaaacaaacnnnnnnncgattcttcatccaccctttg |
502 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8244668 |
ccaaaactgccgcatcagacagttgttgttggggatcaaaacaaac-ttttttcgattcttcatccaccctttg |
8244740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 474
Target Start/End: Original strand, 8243716 - 8244149
Alignment:
| Q |
29 |
ataattaacctttgagaactgctagaaacacattattttcaatactctttctaacactttgtcatttattggatgaaatcaaagttagtaaagtgcgaat |
128 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
8243716 |
ataattaacctttgaggagtgctagaaacacactattttcaatactctttctaa-actctgtcatttattggataaaatcaaagttactaaagtgcgaat |
8243814 |
T |
|
| Q |
129 |
aacgagcatacttccgtttttaaaataatatcttttagtaaagttcaatcaagctgattcnnnnnnnnnnaaagatttctttgattttcttttaccttca |
228 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
8243815 |
aacgagcatacttccatttttaaaacaatctctttcagtaaagttctatcaagttgattctttttttt--aaagatttctttgattttctgttaccttca |
8243912 |
T |
|
| Q |
229 |
catggtttcaaagttggattcatttgcatatattcaccccgctcaaaacgtgtcttctttctttggtgttacccttagccagcttcgcttaatttctttt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | |
|
|
| T |
8243913 |
catggtttcaaagttggattcatttgcatgtattcaccccgctcaaaacgtgtcttctttctttggtgttacccttaggcagcatcgtttaatttcttct |
8244012 |
T |
|
| Q |
329 |
taacaattattctctacaatcgttatatggcacaccgttgtaatagtgaggaccgtttgatttagaaatagaaaattaatttcactaaatttaaaggtct |
428 |
Q |
| |
|
||||||||||||||||| | | |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8244013 |
aaacaattattctctacagcctctgtatgtcacaccgttgtaaaagtgatgaccgtttgatttagaaatagaaaattaatttcactaaatttaatggtct |
8244112 |
T |
|
| Q |
429 |
ccactactgccacatcagacagttgttgttggggatcaaaacaaac |
474 |
Q |
| |
|
|||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
8244113 |
ccacaact---------gacagttgttgtaggggatcaaaacaaac |
8244149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 124 - 502
Target Start/End: Original strand, 8243210 - 8243585
Alignment:
| Q |
124 |
cgaataacgagcatacttccgtttttaaaataatatcttttagtaaagttcaatcaagctgattcnnnnnnnnnnaaagatttctttgattttcttttac |
223 |
Q |
| |
|
|||||||||||||||||| | |||| |||| ||| |||||| ||||||||| |||||| |||||| ||| |||||||||||||| ||||| |
|
|
| T |
8243210 |
cgaataacgagcatactttcattttcaaaacaatctctttttgtaaagttctatcaagttgattctttttttt---aagttttctttgattttcctttac |
8243306 |
T |
|
| Q |
224 |
cttcacatggtttcaaagttggattcatttgcatatattcaccccgctcaaaacgtgtcttctttctttggtgttacccttagccagcttcgcttaattt |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8243307 |
cttcacatggttttaaagttggattcatttgcatgtattcactccgctcaaaacgtgtcttctttctttggtgttacccttagccagcttcgcttaattt |
8243406 |
T |
|
| Q |
324 |
ctttttaacaattattctctacaatcgttatatggcacaccgttgtaatagtgaggaccgtttgatttagaaatagaaaattaatttcactaaatttaaa |
423 |
Q |
| |
|
||| | ||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8243407 |
cttctaaacaattattctctacatccgttgtatgtcacaccgttgtaatagtgaggaccgtttgatttagaaatagaaaattaatttcactaaatgtaaa |
8243506 |
T |
|
| Q |
424 |
ggtctccactactgccacatcagacagttgttgttggggatcaaaacaaacnnnnnnncgattcttcatccaccctttg |
502 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
8243507 |
ggtctccacaactgccgcatcagacagttgttgttggggatcaaaacaaactttttttcgattcttcatcaaccctttg |
8243585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 204 - 347
Target Start/End: Original strand, 8450528 - 8450672
Alignment:
| Q |
204 |
tttctttgattttcttttaccttcacatggtttcaaagttggattcatttgcatatattcaccccgctcaaaacgtgtcttctttctttggtgttaccct |
303 |
Q |
| |
|
|||||| | |||||||||||| || |||||||| |||| ||||||||||||||| |||||| |||||||||| ||||||||||| |||| ||||||| | |
|
|
| T |
8450528 |
tttcttcggttttcttttaccctcccatggttttaaagatggattcatttgcatgtattcatcccgctcaaattgtgtcttctttatttgttgttacctt |
8450627 |
T |
|
| Q |
304 |
tagccagcttcgcttaatttcttttta-acaattattctctacaa |
347 |
Q |
| |
|
| |||||||||| || |||| ||| || ||| ||||||||||||| |
|
|
| T |
8450628 |
ttgccagcttcgtttcatttttttctagacatttattctctacaa |
8450672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 8244865 - 8244947
Alignment:
| Q |
31 |
aattaacctttgagaactgctagaaacacattattttcaatactctttctaacactttgtcatttattggatgaaatcaaagtt |
114 |
Q |
| |
|
||||||||||| || | ||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
8244865 |
aattaacctttaaggagtgctagaaacacactattttcaatactctttctaacactctgt-atttattggatgaaattaaagtt |
8244947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 8234072 - 8234126
Alignment:
| Q |
204 |
tttctttgattttcttttacctt-cacatggtttcaaagttggattcatttgcat |
257 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
8234072 |
tttctttgatattctttaacctttcacatggtctcaaacttggattcatttgcat |
8234126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University