View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_31 (Length: 482)
Name: NF1172_high_31
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 39619178 - 39619486
Alignment:
| Q |
16 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619178 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
39619277 |
T |
|
| Q |
116 |
agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619278 |
agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
39619377 |
T |
|
| Q |
216 |
gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg |
315 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619378 |
gaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg |
39619477 |
T |
|
| Q |
316 |
ctactaaaa |
324 |
Q |
| |
|
||||||||| |
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| T |
39619478 |
ctactaaaa |
39619486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 39619517 - 39619577
Alignment:
| Q |
361 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtccttaattgaagacaatg |
421 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
39619517 |
ggatgtgaggaagaataagtggaacacgttttccaaattctgtccttaattgaagacaatg |
39619577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 17516824 - 17516516
Alignment:
| Q |
16 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17516824 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacagatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
17516725 |
T |
|
| Q |
116 |
agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
215 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17516724 |
agagggaagacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
17516625 |
T |
|
| Q |
216 |
gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17516624 |
gaaaagcgtggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttgctagatctg |
17516525 |
T |
|
| Q |
316 |
ctactaaaa |
324 |
Q |
| |
|
||||||||| |
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|
| T |
17516524 |
ctactaaaa |
17516516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 17516491 - 17516445
Alignment:
| Q |
361 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
407 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
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|
| T |
17516491 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
17516445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 52402520 - 52402828
Alignment:
| Q |
16 |
ataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52402520 |
ataacagaacccaccggaaagaaccaaatcggaaaaaacaggaggaacagatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaag |
52402619 |
T |
|
| Q |
116 |
agagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52402620 |
agagagaaaacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatggaaggtcaccg |
52402719 |
T |
|
| Q |
216 |
gaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttgctagatctg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
52402720 |
gaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttgctagatctg |
52402819 |
T |
|
| Q |
316 |
ctactaaaa |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
52402820 |
ctactaaaa |
52402828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 52402853 - 52402899
Alignment:
| Q |
361 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
407 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
52402853 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
52402899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 24610560 - 24610426
Alignment:
| Q |
35 |
agaaccaaaccgg-aaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaagagagggaaaacgaggatc |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
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|
| T |
24610560 |
agaaccaaaccgggaaaacacaggaggaacatatctgcagcaaactaaaaagctagaaacacttgaaattgatggagcaaagatagggaaaacatggatt |
24610461 |
T |
|
| Q |
134 |
tgaaacggatccacaacaagaacagagaaaaacga |
168 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |
|
|
| T |
24610460 |
tgaaacggatccacaaaaagaatagagaaaaacga |
24610426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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