View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_42 (Length: 440)
Name: NF1172_high_42
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 55 - 432
Target Start/End: Original strand, 43036973 - 43037350
Alignment:
| Q |
55 |
ctttaagctcaatgttcaaacatttactctaaaattcttataaaattttgcattcgactcatatggaagtccgtaccattttctctatttctattgtgcc |
154 |
Q |
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| T |
43036973 |
ctttaagctcaatgttcaaacatttactctgaaattcttataaaattttgcattcgactcatatggaagtccgtaccattttctctatttctattgtgcc |
43037072 |
T |
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| Q |
155 |
aattcaaggcgcttaacatctatttagacctaaagcaaacttgaaagacaccctttctaaccataacttttatgttctaaaggatgcctcgctgatctat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037073 |
aattcaaggcgcttaacatctatttagacctaaagcaaacttgaaagacaccctttctaaccataacttttatgttctaaaggatgcctcgctgatctat |
43037172 |
T |
|
| Q |
255 |
ttttagcagactgcttcaaattaaactctgtcactgatagtaaatattacaatccactgcttcaaattaaactccgtcactcttatataaaacaaaaaat |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43037173 |
ttttagcagactgcttcaaattaaactctgtcactgatagtaaatattacaatccactgtttcaaattaaactccgtcactcttatataaaacaaaaaat |
43037272 |
T |
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| Q |
355 |
tacatttgaaaataaacacattattacagtctacacataacaagatttatgagcaaataagcaggacagagtataatt |
432 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037273 |
tacatttgaaaataaacacactattagagtctacacataacaagatttatgagcaaataagcaggacagagtataatt |
43037350 |
T |
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