View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_43 (Length: 440)
Name: NF1172_high_43
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_43 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 30 - 430
Target Start/End: Original strand, 8762350 - 8762750
Alignment:
| Q |
30 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagggcttattccaaacc |
129 |
Q |
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| T |
8762350 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagagcttattccaaacc |
8762449 |
T |
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| Q |
130 |
tgttttgaccatgcccattattctccgcaacagcattggcttccaacttcgattttccaagcctaacttgttccaaatcttgaagagccaaccctttttg |
229 |
Q |
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| T |
8762450 |
tgttttgatcatggccactattctccacaacagcattggcttccaactttgattttccaagcctaacttgttccaaatcttgaagagccaaccctttttg |
8762549 |
T |
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| Q |
230 |
tatgtaagggaattggtcaacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatat |
329 |
Q |
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| T |
8762550 |
tatgtaagggaattggtcaacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatat |
8762649 |
T |
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| Q |
330 |
tgaagtgttggcgcaagaagtttgtttgttcttttttcttcgatttctctgatcacagaactcggaagacttgatgcaaaccttgattctagagctctct |
429 |
Q |
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| T |
8762650 |
tgaagtgttggcgcaagaagtttgtttgttcttttttcttcgatttctctgatcacagaactcggaagacttgatgcaaaccttgattctagagctctct |
8762749 |
T |
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| Q |
430 |
g |
430 |
Q |
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| T |
8762750 |
g |
8762750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 8788881 - 8789050
Alignment:
| Q |
30 |
ccttgttcacctctatatgatgaaaagctagaggaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaagggcttattccaaacc |
129 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
8788881 |
ccttgttcacctctatatgatgaaaagctagtggaagcaccatcatggaatgaggtttttgcttgaaaaaatggaaggtttgaagagtttattccaaacc |
8788980 |
T |
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| Q |
130 |
tgttttgaccatgcccattattctccgcaacagcattggcttccaacttcgattttccaagcctaacttg |
199 |
Q |
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| T |
8788981 |
tgttttgaccatggccattattctccgcaacaacatcggcttccaactttgattttacaagcctaacttg |
8789050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 8789054 - 8789137
Alignment:
| Q |
248 |
aacatgatgtgttggaaattggttgaaattgttaaaaacattgtttacacctcttgtttgatatgccagtgtttgcaaatattg |
331 |
Q |
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| T |
8789054 |
aacatgatgtgttggaaattggttaaaatggttaaaaacattgtttgtacctcttgtttgatatgccagtgtatgcaaacattg |
8789137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 8789175 - 8789230
Alignment:
| Q |
372 |
atttctctgatcacagaactcggaagacttgatgcaaaccttgattctagagctct |
427 |
Q |
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| T |
8789175 |
atttctctgatcacagaactcgatagacctgatgcaaacattgatgttagagctct |
8789230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 9554 - 9504
Alignment:
| Q |
63 |
gaagcaccatcattgaatgagttttttgcttgaaaaaatggaaggtttgaa |
113 |
Q |
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| T |
9554 |
gaagcaccatcattgaaggagtttttcgcctgaaaaactgaaaggtttgaa |
9504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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