View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_44 (Length: 439)
Name: NF1172_high_44
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 321 - 433
Target Start/End: Complemental strand, 8762462 - 8762350
Alignment:
| Q |
321 |
catggtcaaaacaggtttggaataagcccttcaagcctgccattttttcaagcaaaaaactcattcaatgatggtgcttcctctagcttttcatcatata |
420 |
Q |
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|||| |||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8762462 |
catgatcaaaacaggtttggaataagctcttcaaaccttccattttttcaagcaaaaaactcattcaatgatggtgcttccactagcttttcatcatata |
8762363 |
T |
|
| Q |
421 |
gaggtgaacaagg |
433 |
Q |
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||||||||||||| |
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| T |
8762362 |
gaggtgaacaagg |
8762350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 321 - 433
Target Start/End: Complemental strand, 8788993 - 8788881
Alignment:
| Q |
321 |
catggtcaaaacaggtttggaataagcccttcaagcctgccattttttcaagcaaaaaactcattcaatgatggtgcttcctctagcttttcatcatata |
420 |
Q |
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||||||||||||||||||||||||| | |||||| ||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
8788993 |
catggtcaaaacaggtttggaataaactcttcaaaccttccattttttcaagcaaaaacctcattccatgatggtgcttccactagcttttcatcatata |
8788894 |
T |
|
| Q |
421 |
gaggtgaacaagg |
433 |
Q |
| |
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||||||||||||| |
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| T |
8788893 |
gaggtgaacaagg |
8788881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 31296910 - 31296957
Alignment:
| Q |
84 |
ttgaagttatgtgtttatatttgtgctgtttgcaatgtgttaaattaa |
131 |
Q |
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|||||| ||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
31296910 |
ttgaagctatgtgtttatatatgtgctgtttggaatgtgttaaattaa |
31296957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 1194131 - 1194084
Alignment:
| Q |
84 |
ttgaagttatgtgtttatatttgtgctgtttgcaatgtgttaaattaa |
131 |
Q |
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|||||| ||||||||| ||| ||||||||||| ||||||||||||||| |
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| T |
1194131 |
ttgaagctatgtgtttgtatatgtgctgtttggaatgtgttaaattaa |
1194084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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