View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_53 (Length: 393)
Name: NF1172_high_53
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 1580920 - 1581282
Alignment:
| Q |
1 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580920 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
1581019 |
T |
|
| Q |
101 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581020 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
1581119 |
T |
|
| Q |
201 |
acagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581120 |
acagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgca |
1581219 |
T |
|
| Q |
301 |
ctttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581220 |
ctttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
1581282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 1603895 - 1603533
Alignment:
| Q |
1 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603895 |
tctcagtaaacaccaaagtcgtcttttaatgtcacttaaagaagatatagctgatgattttctcaacgacacagagaagaagacttttggtagaaaggat |
1603796 |
T |
|
| Q |
101 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603795 |
cggggcactaaaagtaaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtcttt |
1603696 |
T |
|
| Q |
201 |
acagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603695 |
acagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgca |
1603596 |
T |
|
| Q |
301 |
ctttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603595 |
ctttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
1603533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 363
Target Start/End: Original strand, 1587507 - 1587763
Alignment:
| Q |
115 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggc----------aaaagtctttacag |
204 |
Q |
| |
|
||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||| |
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| T |
1587507 |
taaacaggatggtttagaagtgactgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggagcatgggaactaacaagt-attacag |
1587605 |
T |
|
| Q |
205 |
tcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcacttt |
304 |
Q |
| |
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|||| ||| | ||||||| |||| |||| ||||||||||| ||| ||| ||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
1587606 |
tcttctacgtggttggaaaactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcacttt |
1587705 |
T |
|
| Q |
305 |
ctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
363 |
Q |
| |
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|||| ||||| || |||| || | |||||||| ||||||| ||||||||||||||| |
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| T |
1587706 |
gtacttgacaataaccaggtgat-gttataaactcgtttattattttctgcatttaact |
1587763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 1590716 - 1590654
Alignment:
| Q |
115 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtcttt |
177 |
Q |
| |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1590716 |
taaaccggttggtttagaagtgattgtgttggacccttcttttagagagttcagaatgtcttt |
1590654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 198 - 363
Target Start/End: Complemental strand, 39615859 - 39615694
Alignment:
| Q |
198 |
tttacagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagtt |
297 |
Q |
| |
|
||||||||||| ||||| |||||||||||| | ||||| |||| |||||||||| ||||||| ||||||| ||||| ||||||||||||| |||||| |
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| T |
39615859 |
tttacagtcttatacaaaattggaaacatgctgtgaggggaaatggttttgaaataggtcaaatactcaacgtttggtcatttagggtcaaggacaagtt |
39615760 |
T |
|
| Q |
298 |
gcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact |
363 |
Q |
| |
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||| ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39615759 |
gcagtttgtactcaacattaattaggtaatagctataaacttgtttatttctttctgcatttaact |
39615694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 39615951 - 39615893
Alignment:
| Q |
115 |
taaactggttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgt |
173 |
Q |
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||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39615951 |
taaaccggttggtttagaagtgattgtgttggacccttattttagaagcttcacaatgt |
39615893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 122 - 360
Target Start/End: Complemental strand, 19270271 - 19270025
Alignment:
| Q |
122 |
gttggtatagaagtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaa----------aagtctttacagtcttgta |
211 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| || ||||||||||| |
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| T |
19270271 |
gttggtttagaagtgattgtgttggacccttcttttagagagttcacaatgtcgttgaggaagtggagcatgggcattaacaagtatt-acagtcttgta |
19270173 |
T |
|
| Q |
212 |
caagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcg |
311 |
Q |
| |
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|| | ||||||| |||| |||| ||||||||||||||| ||| ||||||| ||||| ||||| |||||||||||| ||||||||||||| |||||| |
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| T |
19270172 |
catggttggaaaactgttgtgagcaaaaatagttttgaaaagggtaaaaaacttaacatctggacttttagggtcaatgacaagttgcactttgtactcg |
19270073 |
T |
|
| Q |
312 |
acaaaaattaggtaatagctataaacttgtttatttgtttctgcattta |
360 |
Q |
| |
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|||| ||| |||| || | ||||||| ||||||| |||||||||||| |
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|
| T |
19270072 |
acaataatcaggtgat-gttataaacgcgtttattattttctgcattta |
19270025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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