View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1172_high_58 (Length: 382)
Name: NF1172_high_58
Description: NF1172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1172_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 39619269 - 39619486
Alignment:
| Q |
7 |
ggagcagagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619269 |
ggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
39619368 |
T |
|
| Q |
107 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39619369 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
39619468 |
T |
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| Q |
207 |
ctagatctgctactaaaa |
224 |
Q |
| |
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|||||||||||||||||| |
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| T |
39619469 |
ctagatctgctactaaaa |
39619486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 39619517 - 39619577
Alignment:
| Q |
261 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtccttaattgaagacaatg |
321 |
Q |
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| T |
39619517 |
ggatgtgaggaagaataagtggaacacgttttccaaattctgtccttaattgaagacaatg |
39619577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 52402611 - 52402828
Alignment:
| Q |
7 |
ggagcagagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
106 |
Q |
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| T |
52402611 |
ggagcaaagagagagaaaacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
52402710 |
T |
|
| Q |
107 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52402711 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttg |
52402810 |
T |
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| Q |
207 |
ctagatctgctactaaaa |
224 |
Q |
| |
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|||||||||||||||||| |
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| T |
52402811 |
ctagatctgctactaaaa |
52402828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 52402853 - 52402899
Alignment:
| Q |
261 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
307 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
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|
| T |
52402853 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
52402899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 17516733 - 17516516
Alignment:
| Q |
7 |
ggagcagagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
106 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17516733 |
ggagcaaagagagggaagacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccggagagatgga |
17516634 |
T |
|
| Q |
107 |
aggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaatttaaatggtttg |
206 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17516633 |
aggtcaccggaaaagcgtggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaatttaaatggtttg |
17516534 |
T |
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| Q |
207 |
ctagatctgctactaaaa |
224 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
17516533 |
ctagatctgctactaaaa |
17516516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 17516491 - 17516445
Alignment:
| Q |
261 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
307 |
Q |
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|
||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
17516491 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
17516445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 24610487 - 24610426
Alignment:
| Q |
7 |
ggagcagagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacga |
68 |
Q |
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|||||| ||| ||||||||| |||| |||||||||||||||| ||||| |||||||||||| |
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| T |
24610487 |
ggagcaaagatagggaaaacatggatttgaaacggatccacaaaaagaatagagaaaaacga |
24610426 |
T |
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